View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_93 (Length: 256)
Name: NF6641_high_93
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_93 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 28665977 - 28665736
Alignment:
| Q |
1 |
atgcaatggggagaatggaaagcatatggggaaaagactgcagggagtttaaacctgaaagatggttaaaagatggtcgttttatgagtgaatctgcgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28665977 |
atgcaatggggagaatggaaagcatatggggaaaagactgcagagagtttaaacctgaaagatggttaaaagatggtcgttttatgagtgaatctgcgta |
28665878 |
T |
|
| Q |
101 |
caaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatatgttgctgctagtatcatatacagatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28665877 |
caaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatatgttgctgctagtatcatatacagatac |
28665778 |
T |
|
| Q |
201 |
catgtgaaggtggtggagaatcaccctgtggaaccaaagatt |
242 |
Q |
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| T |
28665777 |
catgtgaaggtggtggagaatcaccctgtggaaccaaagatt |
28665736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 13888705 - 13888929
Alignment:
| Q |
4 |
caatggggagaatggaaagcatatggggaaaagactgcagggagtttaaacctgaaagatggttaa---aagatggtcgttttatgagtgaatctgcgta |
100 |
Q |
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||||||| |||||||||||||||||||||||||| ||| |||||| || || ||||||||||||| ||||||||| ||| || ||||||||||||| |
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| T |
13888705 |
caatgggaagaatggaaagcatatggggaaaagattgcttggagttcaagccagaaagatggttaactaaagatggtcatttcatcggtgaatctgcgta |
13888804 |
T |
|
| Q |
101 |
caaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatatgttgctgctagtatcatatacagatac |
200 |
Q |
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| T |
13888805 |
caaattcactgctttcaatggaggaccgaggttgtgtttaggcaaagattttgcatactatcaaatgaaatatgtcgcagctagcatcatatttcgttac |
13888904 |
T |
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| Q |
201 |
catgtgaaggtggtggagaatcacc |
225 |
Q |
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| T |
13888905 |
catgttaaggttgttgagaatcacc |
13888929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 13895999 - 13895808
Alignment:
| Q |
4 |
caatggggagaatggaaagcatatggggaaaagactgcagggagtttaaacctgaaagatggttaa---aagatggtcgttttatgagtgaatctgcgta |
100 |
Q |
| |
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||||||| |||||||||| ||||||||||||||| ||| |||||| || || ||||||||||||| ||||||||| ||| ||||| |||||||| || |
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| T |
13895999 |
caatgggaagaatggaaaacatatggggaaaagattgcttggagttcaagccagaaagatggttaaccgaagatggtcatttcatgagcgaatctgccta |
13895900 |
T |
|
| Q |
101 |
caaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatatgttgctgctagtatcatat |
192 |
Q |
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| T |
13895899 |
caaattcacagcttttaatggaggaccaaggttgtgtttaggcaaagattttgcatactatcaaatgaaatatgttgcagctaacatcatat |
13895808 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 13891748 - 13891842
Alignment:
| Q |
135 |
tgtttaggcaaagattttgcatattatcaaatgaaatatgttgctgctagtatcatatacagataccatgtgaaggtggtggagaatcaccctgt |
229 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||| |||| ||||||| | |||||||| ||||| || ||||| |||||||| |
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| T |
13891748 |
tgtttaggcaaaggttttgcatactatcaaatgaaatatgttgcagctaccatcatatttcgttaccatgttaaggttgttgagaagcaccctgt |
13891842 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 13892907 - 13892814
Alignment:
| Q |
99 |
tacaaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatatgttgctgctagtatcatat |
192 |
Q |
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|||||||||||| |||||||| ||| | |||| |||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||||| |
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| T |
13892907 |
tacaaattcactatttttaatggaggatcgaggttgtgtttaggtaaagattttgcatactatcaaacgaaatatgttgcagctagcatcatat |
13892814 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 13890729 - 13890655
Alignment:
| Q |
99 |
tacaaattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatat |
173 |
Q |
| |
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||||| |||||||| |||||||| ||| |||| || |||||||||||||||||||| ||||||||||||||| |
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| T |
13890729 |
tacaatttcactgcttttaatggaagacaaaggttgtgcttaggcaaagattttgcatactatcaaatgaaatat |
13890655 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 13893314 - 13893413
Alignment:
| Q |
130 |
ggttatgtttaggcaaagattttgcatattatcaaatgaaatatgttgctgctagtatcatatacagataccatgtgaaggtggtggagaatcaccctgt |
229 |
Q |
| |
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|||| ||||||| ||||||||||||||| |||||||||||||||||| |||| ||||||| | |||| ||| ||| | || |||||||||||||| |
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| T |
13893314 |
ggttgtgtttagccaaagattttgcatacattcaaatgaaatatgttgcaactagcatcatatttcgttaccgtgttaagattgttgagaatcaccctgt |
13893413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 1033989 - 1033765
Alignment:
| Q |
6 |
atggggagaatggaaagcatatggggaaaagactgcagggagtttaaacctgaaagatggttaa---aagatggtcgttttatgagtgaatctgcgtaca |
102 |
Q |
| |
|
||||| |||||||||| ||||| |||||||| ||| |||||| || || ||||||||||||| ||||||||| ||| ||||| | || ||| |||| |
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| T |
1033989 |
atgggaagaatggaaaatatatgaggaaaagattgcttggagttcaagccagaaagatggttaactaaagatggtcatttcatgagcgtatttgcctaca |
1033890 |
T |
|
| Q |
103 |
aattcactgcatttaatggcggacctcggttatgtttaggcaaagattttgcatattatcaaatgaaatatgttgctgctagtatcatatacagatacca |
202 |
Q |
| |
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|||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| | ||||| |
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| T |
1033889 |
aatttactgcttttaatggaggaccaaggttgtgtttaggcaaagattttgcatactatcaaatgaaatatgttgcagctagcatcatatttggttacca |
1033790 |
T |
|
| Q |
203 |
tgtgaaggtggtggagaatcaccct |
227 |
Q |
| |
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||| ||||| || |||||||||||| |
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|
| T |
1033789 |
tgttaaggttgttgagaatcaccct |
1033765 |
T |
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