View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_95 (Length: 253)
Name: NF6641_high_95
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_95 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 31782014 - 31782241
Alignment:
| Q |
5 |
tgtggaggagcagagagaaggagttttacctttggaacttgccgggttgcgagtgatttgtattgggaaggagttagagagtggtgactgtgaggtggtg |
104 |
Q |
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| T |
31782014 |
tgtggagaagcggagagaaggagttttacctttggaacttgacgggttgcgagtgatttgtattgggaaggagttagagagtggtgactgcgaggtggtg |
31782113 |
T |
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| Q |
105 |
agtttgaagttaaagcagattgctgccatagtggaggagtgtgtgggaccgggtgttatagtgagttttggagagttgaagtcttttgtgaacgatgatg |
204 |
Q |
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| T |
31782114 |
agtttgaagttaaagcagattgctgccatagtggaggagtgtgtgggaccgggtgttatagtgagttttggagagttgaagtcttttgtcaac---gatg |
31782210 |
T |
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| Q |
205 |
atggtgggtttgttgaagaattagggaaatt |
235 |
Q |
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| T |
31782211 |
atggtgggtttgttgaagaattagggaaatt |
31782241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 19636179 - 19635964
Alignment:
| Q |
17 |
gagagaaggagttttacctttggaacttgccgggttgcgagtgatttgtattgggaaggagttagagagtggtgactgtgaggtggtgagtttgaagtta |
116 |
Q |
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| T |
19636179 |
gagagaaggagttttacctttggaacttgccgggttgcgtgtgatttgtattgggaaggagttagagagtggtgactgcgaggtggtgagtttgaagtta |
19636080 |
T |
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| Q |
117 |
aagcagattgctgccatagtggaggagtgtgtgggaccgggtgttatagtgagttttggagagttgaagtcttttgtgaacgatgatgatggtgggtttg |
216 |
Q |
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| T |
19636079 |
aagcagattgctgccatagcggaggagtgtgtgggaccgggtgttatagtgagttttggagagttgaagtcttttgtgaacgat---gatggtgggtttg |
19635983 |
T |
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| Q |
217 |
ttgaagaattagggaaatt |
235 |
Q |
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| T |
19635982 |
ttgaagaattagggaaatt |
19635964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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