View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_99 (Length: 251)
Name: NF6641_high_99
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_99 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 19846544 - 19846303
Alignment:
| Q |
10 |
aaaaatatggcatacaagatgaatcctggcatatggcagaaacatgccggatacaatagcgtagtctatggcggctggcacaaaatcctccatgccttgg |
109 |
Q |
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| T |
19846544 |
aaaaatatggcatacaagatgaatcctggcatatggcagaaacatgccggatacaatagcgtagtctatggcggctggcacaaaatcctccatgccttgg |
19846445 |
T |
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| Q |
110 |
tgccattgtggcgacaatttaacaacattcagataaagtaatgagtaatcatacagacaagttgttcattgcttttaaactgaaacaacatctgatgaat |
209 |
Q |
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| T |
19846444 |
tgccgttatggcgacaatttaacaacattcagataaagtaatgagtaatcatacagacaagttgttcattgcttttaaactgaaacaacatctgatgaat |
19846345 |
T |
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| Q |
210 |
gaactaaataccaaatgctcattcagaatatgatcaactacc |
251 |
Q |
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| T |
19846344 |
gaactaaataccaaatgctcattcagaatatgatcaactacc |
19846303 |
T |
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Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 36 - 237
Target Start/End: Original strand, 22691230 - 22691436
Alignment:
| Q |
36 |
tggcatatggcagaaacatgccggatacaatagc----gtagtctatggcggctggcacaaaatcctccatgcctt--ggtgccattgtggcgacaattt |
129 |
Q |
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| T |
22691230 |
tggcctatggcagaaacatgccg-atataatagccattgtagcctatggcggctggcacaaaatcctccatgccttttggtgtcgttatagcgacaatat |
22691328 |
T |
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| Q |
130 |
aacaacattcagataaagtaatgagtaatcatacagacaagttgttcattgcttttaaactgaaacaacatctgatgaatgaactaaataccaaatgctc |
229 |
Q |
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| T |
22691329 |
aacaacattcagataaagtattgtgtaatcatacagacaagttgttcattgcttttaaactgaaacagcatctgatgaatgaactaaataccaaatgctc |
22691428 |
T |
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| Q |
230 |
attcagaa |
237 |
Q |
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| T |
22691429 |
attcagaa |
22691436 |
T |
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