View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_10 (Length: 612)
Name: NF6641_low_10
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 14 - 597
Target Start/End: Original strand, 31456840 - 31457428
Alignment:
| Q |
14 |
atcaagttgatatatgttctatgcagtgaaattgctacaaacaatatcagacaaggtaaataacttgaattggaaggttacaaaccgttcctgcaacagt |
113 |
Q |
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| T |
31456840 |
atcaagttgatatatgttctatgcagtgaaattgctacaaacaatatcagacaaggtaaataacttgaattggaaggttacaaaccgttcctgcaacagt |
31456939 |
T |
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| Q |
114 |
ggtgataaaggttttggtaatgagattattgtagaggatcaaattgtaagaaatgtcacatgtgattgctctttcaactctagcactgtttgccatgtga |
213 |
Q |
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| T |
31456940 |
ggtgataaaggttttggtaatgagattattgtagaggatcaaattgtaagaaatgtcacatgtgattgctctttcaactctagcactgtttgccatgtga |
31457039 |
T |
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| Q |
214 |
caatgatgtaagtttctaaaacccctcccnnnnnnnttaaatcaaacaattttgttgatatttacacacaaaagagtttttaattttacaataaaactaa |
313 |
Q |
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| T |
31457040 |
caatgatgtaagtttctaaaacccctcccaaaaaaattaaatcaaacaattttgttgatatttacacacaaaagagtttttaattttacaataaaactaa |
31457139 |
T |
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| Q |
314 |
tgaatttttattgtacacataaaatatgtgccctatgtggacaatgtcacctttggttcatttatat-----taatttttatttattaaattcaactgtt |
408 |
Q |
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| T |
31457140 |
tgaatttttattgtacacataaaatatgtgccctatgtggacaatgtcacctttggttcatttatattactgtaatttttatttattaaattcaactgtt |
31457239 |
T |
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| Q |
409 |
tcatttgagaatgactaatgaaaataattggctatggtagctttctcaagggtctcaacatatctggagtttttccaagtgaatttggaaatctcactca |
508 |
Q |
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| T |
31457240 |
tcatttgagaatgactaattaaaataattggctatggtagctttctcaagggtctcaacatatctggaatttttccaagtgaatttggaaatctcactca |
31457339 |
T |
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| Q |
509 |
cctcaaaacactgtaagtgattacattattttctaatttacttttccctttgtcattgtgttagaaaatgttgatcatagattatttat |
597 |
Q |
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| T |
31457340 |
cctcaaaacactgtaagtgattacattattttctaatttacttttccctttgtcattgtgttagaaaatattgatcatagattatttat |
31457428 |
T |
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