View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_101 (Length: 252)
Name: NF6641_low_101
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_101 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 18005676 - 18005910
Alignment:
| Q |
12 |
atcatcacatacactcaacaccataaaatc----------tcttttgagaaattacattagtctnnnnnnntggagttcaaagggtcatttttaattaag |
101 |
Q |
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| T |
18005676 |
atcatcacatacactcaacaccataaaatcccccacttactcttttgagaaattacattagtctaaaaaaatggagttcaaagggtcatttttaattaag |
18005775 |
T |
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| Q |
102 |
cttctcttgcttctgcatgtatcaattctctgtgcttcacagtcacatgattttgatttcttctactttgttcaacaggtactataaaatttgatactat |
201 |
Q |
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| T |
18005776 |
cttctcttgcttctgcatgtatcaattctctgtgcttcacagtcacatgattttgatttcttctactttgttcaacaggtactataaaatttgatactat |
18005875 |
T |
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| Q |
202 |
tgtcattatatgctccgaaaaatctcacatgtttt |
236 |
Q |
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| T |
18005876 |
tgtcattatatgctccgaaaaatctcacatgtttt |
18005910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 17998399 - 17998515
Alignment:
| Q |
73 |
tggagttcaaagggtcatttttaattaagcttctcttgcttctgcatgtatcaattctctgtgcttcacagtcacatgattttgatttcttctactttgt |
172 |
Q |
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| T |
17998399 |
tggagtccaaaggatcagttttaattaagcttctattgctgctgaatgtaacagttctatgtgcttcacaatcacaggattttgatttcttttactttgt |
17998498 |
T |
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| Q |
173 |
tcaacaggtactataaa |
189 |
Q |
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| T |
17998499 |
tcaacaggtaatataaa |
17998515 |
T |
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