View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_106 (Length: 250)
Name: NF6641_low_106
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_106 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 52375390 - 52375159
Alignment:
| Q |
1 |
atcaagaagacctaagattctgtaacttggttgatgaattgacatgatcacgatgcttccactttgtgcaattctctgaagtactttcacaaccatgaaa |
100 |
Q |
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| T |
52375390 |
atcaagaagacctaagattctgtaacttggttgatgaattgacatgatcacgatgcttccactttgtgcaattctctgaagtactttaacaaccatgaaa |
52375291 |
T |
|
| Q |
101 |
gcacttgtggaatccaatcctgaagttggttcatctaggaagagcactattggatcatggattatgtcgattccgattgaaactcgacgcctttctccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52375290 |
gcacttgtggaatccaatcctgaagttggttcatctaggaagagcactattggatcatggattatgtcgattccgattgaaactcgacgcctttctccac |
52375191 |
T |
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| Q |
201 |
cagagactccacggtgaccttcatctccgata |
232 |
Q |
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|||||||||||||||||||||| ||||||||| |
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| T |
52375190 |
cagagactccacggtgaccttcgtctccgata |
52375159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 40383778 - 40383993
Alignment:
| Q |
16 |
gattctgtaacttggttgatgaattgacatgatcacgatgcttccactttgtgcaattctctgaagtactttcacaaccatgaaagcacttgtggaatcc |
115 |
Q |
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||||||||| ||||||||||||| | ||| || |||||||| || || || ||||||||||| | || ||||| |||||| |||| ||||| || || |
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| T |
40383778 |
gattctgtagcttggttgatgaacggtcatcatgacgatgctaccgctctgagcaattctctgcaaaaccttcaccaccatgtaagcgcttgtagagtca |
40383877 |
T |
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| Q |
116 |
aatcctgaagttggttcatctaggaagagcactattggatcatggattatgtcgattccgattgaaactcgacgcctttctccaccagagactccacggt |
215 |
Q |
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| T |
40383878 |
agtccagaggttggttcatccaagaacaaaatgattggatcgtggatgatgtctgtgccgatggagacacggcggcgttctccaccggaaacaccacggt |
40383977 |
T |
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| Q |
216 |
gaccttcatctccgat |
231 |
Q |
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|||||||||||||||| |
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| T |
40383978 |
gaccttcatctccgat |
40383993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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