View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_108 (Length: 249)
Name: NF6641_low_108
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_108 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 6943408 - 6943236
Alignment:
| Q |
50 |
agcttcttctgtttgctaacctcctggacgtttatggaaaatccaataccttttcatgaatgcctgtaattatcaagaggtaagtttcaatcatttatct |
149 |
Q |
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| T |
6943408 |
agcttcttctgtttgctaacctcccggacgtttatggaaaatccaatacctcttcatgaatgcctgtaattatcatgaggtaagtttcaatcattaatct |
6943309 |
T |
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| Q |
150 |
cttggagacttggctaattgctgcacag-ttttaaaaattcatatggatctttgtatggttgtaatttaatgc |
221 |
Q |
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| T |
6943308 |
cttggagacttagctaattgctgcacagtttttaaaaattgatatggatctttgtatggttgaaacttaatgc |
6943236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 6940212 - 6940139
Alignment:
| Q |
50 |
agcttcttctgtttgctaacctcctggacgtttatggaaaatccaataccttttcatgaatgcctgtaattatc |
123 |
Q |
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| T |
6940212 |
agcttcttctgtttgctaacctcccggacgtttatggaaaatccaataccttttcatgaatgcctgtaattatc |
6940139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 6940143 - 6940066
Alignment:
| Q |
144 |
ttatctcttggagacttggctaattgctgcacagttttaaaaattcatatggatctttgtatggttgtaatttaatgc |
221 |
Q |
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| T |
6940143 |
ttatctcttggagacttagctaattgctgcacagttttaaaaattcatatggatctttgtatggttgaaagttaatgc |
6940066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 6787366 - 6787569
Alignment:
| Q |
16 |
catgtcttgacttaactgccaagttttctaaatcagcttcttctgtttgctaacctcctggacgtttatggaaaatccaataccttttcatgaatgcctg |
115 |
Q |
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| T |
6787366 |
catgtcctgtcttaacaaccaagttttcaaaatcagcttgttttgtttgctaacctcccggacgtttatggaatatccaattccttttcatga------- |
6787458 |
T |
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| Q |
116 |
taattatcaagaggtaagtttcaatcatttatctcttgg-agacttggctaattgctgcacagttttaaaa-attcatatggatctttgtatggttgtaa |
213 |
Q |
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| T |
6787459 |
------------ggtaagtttcaagcattta-ctcttgggagacttagctaatggctgcacagttttaaaaaattcatatggatctttgtatgggtgaaa |
6787545 |
T |
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| Q |
214 |
tttaatgcgttgaatgtatatttt |
237 |
Q |
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| T |
6787546 |
ctcaatgcatttaatgtatatttt |
6787569 |
T |
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