View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_11 (Length: 609)
Name: NF6641_low_11
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 17316279 - 17316590
Alignment:
| Q |
11 |
cagagacaagttggtaaaacatatggagccttaaaactctatgaaataggaaggaatgattccttaccgttcatgaaaaacaaaacaaacagagacaacg |
110 |
Q |
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| T |
17316279 |
cagagacaagttggtaaaacatatggagccttaaaactctatgaaataggaaggaacgattccttaccgttcatgaaaaa-----caaacagagacaacg |
17316373 |
T |
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| Q |
111 |
gggacggccacaatggatgctccttgtctttagttccaatcgatcaatcaactgatgctctataagcagaagctataagtagaatctgtaagcaacgacg |
210 |
Q |
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| T |
17316374 |
gggacggccacaatggatgctccttgtctttagttccaatcgatcaatcaactgatgctctataagcagaagctataagtagaatctgtaagtaaagacg |
17316473 |
T |
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| Q |
211 |
atgaacaatttagaagttatacgaaaaccccataagcataagcaacaaggaagatccataagtataagttataagcnnnnnnnntaaaagttactccctc |
310 |
Q |
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| T |
17316474 |
atgaataatttagaagttatacgaaaaccccataagcataggcaacaaggaagatccataagtataagttataagcaaaaaaaataaaagttactccctc |
17316573 |
T |
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| Q |
311 |
cgtcccccgtcccttaa |
327 |
Q |
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| T |
17316574 |
cgtcccccgtcccttaa |
17316590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 513 - 592
Target Start/End: Original strand, 17316665 - 17316743
Alignment:
| Q |
513 |
aataggtgctagggatggagggagtataaactataagcnnnnnnnnnntctataagctgaatctataagcagcatcgata |
592 |
Q |
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| T |
17316665 |
aataggtgctagggatggagggagtataaactataagc-aaaaaaaaatctataagctgaatctataagcagcatcgata |
17316743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 447
Target Start/End: Original strand, 32236856 - 32236933
Alignment:
| Q |
367 |
gtgtaattaatatgtctatttcgtttcgtgtgttaacattatcaaaatatcct--gtttatatgtgtattaaatttaactttt |
447 |
Q |
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| T |
32236856 |
gtgtaattaatatgtct-----gttttgtgtgttaatattatcaaattattctttgtttatatgtgtattaaatttgactttt |
32236933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 320 - 447
Target Start/End: Original strand, 41865687 - 41865817
Alignment:
| Q |
320 |
tcccttaatgtaagccccttttgttttttccacatttctta-------ttgttggtgtaattaatatgtctatttcgtttcgtgtgttaacattatcaaa |
412 |
Q |
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| T |
41865687 |
tcccttaatgtaagccccttttgcttttttcacatttcttaagaaaagttgttggtctaattaatgtgtcta-----ttttgtgtgttaacattaccaaa |
41865781 |
T |
|
| Q |
413 |
atatcc-tgtttatatgtgtattaaatttaactttt |
447 |
Q |
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| T |
41865782 |
ttatccttgtttgtatgtgtattaaatttgactttt |
41865817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 6597875 - 6597950
Alignment:
| Q |
361 |
ttgttggtgtaattaatatgtctatttcgtttcgtgtgttaacattatcaaaatatcc-tgtttatatgtgtattaaattt |
440 |
Q |
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| T |
6597875 |
ttgttgatgtaattaatatgtctattttgt-----gtgttaacattaccaaaatatccttttttgtatgtgtattaaattt |
6597950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 22198478 - 22198437
Alignment:
| Q |
11 |
cagagacaagttggtaaaacatatggagccttaaaactctat |
52 |
Q |
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| T |
22198478 |
cagagacaagttggtaaaacatatacaaccttaaaactctat |
22198437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 20124156 - 20124233
Alignment:
| Q |
317 |
ccgtcccttaatgtaagccccttttgttttttccacatttctta-------ttgttggtgtaattaatatgtctattt |
387 |
Q |
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| T |
20124156 |
ccgtcccttaatgtaagccccttttgcttttttcacattttttaagaaaagttgttggtgtaattaatgtgtctattt |
20124233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 440
Target Start/End: Original strand, 11344526 - 11344651
Alignment:
| Q |
318 |
cgtcccttaatgtaagccccttttgttttttccacatttctta-------ttgttggtgtaattaatatgtctatttcgtttcgtgtgttaacattatca |
410 |
Q |
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| T |
11344526 |
cgtcccttaatgtaagtcccttttgcttttttcacatttcttaagaaaagttattggtgtaattaatgtgtcta-----ttttgtgtgttaacattacca |
11344620 |
T |
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| Q |
411 |
aaata-tcctgtttatatgtgtattaaattt |
440 |
Q |
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| T |
11344621 |
aattattcttttttgtatgtgtattaaattt |
11344651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 447
Target Start/End: Original strand, 34012560 - 34012588
Alignment:
| Q |
419 |
tgtttatatgtgtattaaatttaactttt |
447 |
Q |
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| T |
34012560 |
tgtttatatgtgtattaaatttaactttt |
34012588 |
T |
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