View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_110 (Length: 247)
Name: NF6641_low_110
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_110 |
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| [»] scaffold0891 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4494 - 4269
Alignment:
| Q |
1 |
cagtgatggatagttgaaacactataggaatcaagtgctcatacaaaatacattcatatgttgcatatttataggtgttggaagataattttagaaatat |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4494 |
cagtgatggatagttggaacactataggaatcaagtgctcatacaaaatacattcatatgttgcatatttataggtgttggaagataattttagaaatat |
4395 |
T |
|
| Q |
101 |
atgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatgattaattaagtgttttttccccata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4394 |
atgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatgattaattaagtgttttttccccata |
4295 |
T |
|
| Q |
201 |
aaatattgcatatagtcaatcataag |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4294 |
aaatattgcatatagtcaatcataag |
4269 |
T |
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