View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_114 (Length: 245)
Name: NF6641_low_114
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_114 |
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Alignment Details
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 9744190 - 9744272
Alignment:
| Q |
150 |
cgaactaaaagcaagagggaccgatatcccctaaaaactagtgaggcgatcggttggaagaaccaaccttgaaccctttgcta |
232 |
Q |
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| T |
9744190 |
cgaactaaaagcaagagggaccgcaatcccttaaaaactagtgaggcgatcggttggaagaaccaaccttgaaccctttgcta |
9744272 |
T |
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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 16060525 - 16060432
Alignment:
| Q |
142 |
tagaacaacgaactaaaagcaagagggaccgatatcccctaaaaactagtgaggcg---atcggttggaagaaccaaccttgaaccctttgcta |
232 |
Q |
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| T |
16060525 |
tagaacaacgaactaaaagcaagaggggtcgatatcccctaaaaactagtgaggcgaatattggttggaagaaccaaccttgaaccctttgcta |
16060432 |
T |
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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 16420768 - 16420686
Alignment:
| Q |
150 |
cgaactaaaagcaagagggaccgatatcccctaaaaactagtgaggcgatcggttggaagaaccaaccttgaaccctttgcta |
232 |
Q |
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| T |
16420768 |
cgaactaaaagcaagagggaccactatcccttaaaaactagcgaggcgctcagttggaagaaccaacctcgaaccctttgcta |
16420686 |
T |
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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 28082267 - 28082191
Alignment:
| Q |
148 |
aacgaactaaaagcaagagggaccgatatcccctaaaaactagtgaggcgatcggttggaagaaccaaccttgaacc |
224 |
Q |
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| T |
28082267 |
aacgaactaaaagcaagagggaccgctatcccctaaaaactagcgaggcgatcagtttgaagaagcaaccctgaacc |
28082191 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 24538810 - 24538892
Alignment:
| Q |
150 |
cgaactaaaagcaagagggaccgatatcccctaaaaactagtgaggcgatcggttggaagaaccaaccttgaaccctttgcta |
232 |
Q |
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|||||||||||||||| ||||| |||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
24538810 |
cgaactaaaagcaagatggaccactatctcttaaaaactaacgaggcgttcggttggaagaaccaaccttgaaccctttgcta |
24538892 |
T |
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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 41708378 - 41708294
Alignment:
| Q |
148 |
aacgaactaaaagcaagagggaccgatatcccctaaaaactagtgaggcgatcggttggaagaaccaaccttgaaccctttgcta |
232 |
Q |
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|||||| ||||| |||||||||| | ||||| ||||||||||||||| ||||| |||||||||||||| ||| || ||||||||| |
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| T |
41708378 |
aacgaagtaaaaacaagagggactgctatcctctaaaaactagtgagacgatctgttggaagaaccaatcttaaatcctttgcta |
41708294 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 8231610 - 8231526
Alignment:
| Q |
148 |
aacgaactaaaagcaagagggaccgatatcccctaaaaactagtgaggcgatcggttggaagaaccaaccttgaaccctttgcta |
232 |
Q |
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|||||||||||||||||||||| || | |||||| |||| ||||||||||| |||||||||| ||||| ||| || | ||||||| |
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| T |
8231610 |
aacgaactaaaagcaagagggatcgttgtccccttaaaattagtgaggcgagcggttggaagcaccaatcttaaatcatttgcta |
8231526 |
T |
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