View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6641_low_115 (Length: 245)
Name: NF6641_low_115
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_115 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 14568211 - 14567994
Alignment:
| Q |
10 |
aagaatattggtcagattgttctgcttggtggagcttttgcagtaaatggaagtgtgaatcctgctgctgaaacaaatgtaagtatttccattttgtatt |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14568211 |
aagaacattggtcagattgttctgcttggtggagcttttgcagtaaatggaagtgtgaatccttctgctgaaacaaatgtaagtatttccatttttcatt |
14568112 |
T |
|
| Q |
110 |
caaattccttgaaataaactccgtaaaacaattacaccgcttaccgcttgatctatctaaattttcagttggatttgattccagatattaggtgatccag |
209 |
Q |
| |
|
|||||| ||||||||||||||| |||||| | | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14568111 |
caaatt-cttgaaataaactccataaaactgtcataccgctcaccgcttgatctatctaaattttcagttggatttgattccagatattaggtgatccag |
14568013 |
T |
|
| Q |
210 |
atgctgcagatgttgtatt |
228 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14568012 |
atgctgcagatgttgtatt |
14567994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 14575909 - 14575689
Alignment:
| Q |
10 |
aagaatattggtcagattgttctgcttggtggagcttttgcagtaaatggaagtgtgaatcctgctgctgaaacaaatgtaagtatttccattttgtatt |
109 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||| |||| ||||||||||| | ||||||||| ||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
14575909 |
aagaacattggacagatcgttctacttggtggatctttcgcagtaaatggcaatgtgaatccagctgctgaagcaaatgtaagtatgtctattttgtatt |
14575810 |
T |
|
| Q |
110 |
caaattccttgaaataaactccgt--aaaacaattacaccgcttaccgcttg----atctatctaaattttcagttggatttgattccagatattaggtg |
203 |
Q |
| |
|
| |||| ||| | ||||| ||| | |||| ||| | | | | | ||||| |||||||||| | |||| ||||||||||||||||||||| |||| |
|
|
| T |
14575809 |
c-aatttcttaatataaattccattaaaaaaaatgatatcagtcgctgcttgatatatctatctaactcttcaattggatttgattccagatattcggtg |
14575711 |
T |
|
| Q |
204 |
atccagatgctgcagatgttgt |
225 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14575710 |
atccagatgctgcagatgttgt |
14575689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University