View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_120 (Length: 240)
Name: NF6641_low_120
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_120 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1606457 - 1606228
Alignment:
| Q |
1 |
ttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgaccc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606457 |
ttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgaccc |
1606358 |
T |
|
| Q |
101 |
attccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggcct |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1606357 |
attccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggcct |
1606258 |
T |
|
| Q |
201 |
tggcaacaatattcgagagttatgatgatg |
230 |
Q |
| |
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|||||||||||||| ||||||||| ||||| |
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| T |
1606257 |
tggcaacaatattcaagagttatggtgatg |
1606228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1629755 - 1629526
Alignment:
| Q |
1 |
ttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgaccc |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
1629755 |
ttggcaacgccgcagtggtattccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcactgcccaaggtcgaggtgaccc |
1629656 |
T |
|
| Q |
101 |
attccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||| |
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| T |
1629655 |
attccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaaacctgttgttgacaagtacaaaaccttcttgggcagacct |
1629556 |
T |
|
| Q |
201 |
tggcaacaatattcgagagttatgatgatg |
230 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||| |
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| T |
1629555 |
tggcaacaatattcaagagtaatggtgatg |
1629526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 10820943 - 10821172
Alignment:
| Q |
1 |
ttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgaccc |
100 |
Q |
| |
|
||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
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| T |
10820943 |
ttggcaacgctgcagtggtattccaaaattgcaacattttcgcaagaaaacctttagatggccaagctaacatgatcactgcccaaggtcgaggtgatcc |
10821042 |
T |
|
| Q |
101 |
attccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||| |
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| T |
10821043 |
attccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttaggaagacct |
10821142 |
T |
|
| Q |
201 |
tggcaacaatattcgagagttatgatgatg |
230 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| |
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|
| T |
10821143 |
tggcaacaatattcaagagttatggtgatg |
10821172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1623579 - 1623350
Alignment:
| Q |
1 |
ttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgaccc |
100 |
Q |
| |
|
||||||| || ||||| || |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
1623579 |
ttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgaccc |
1623480 |
T |
|
| Q |
101 |
attccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1623479 |
attccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggcct |
1623380 |
T |
|
| Q |
201 |
tggcaacaatattcgagagttatgatgatg |
230 |
Q |
| |
|
|||||||||| || ||||||||| ||||| |
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| T |
1623379 |
tggcaacaattctcaagagttatggtgatg |
1623350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 18781273 - 18781044
Alignment:
| Q |
1 |
ttggcaatgccgcagtggttttccaaaattgtaacattttcgcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgaccc |
100 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
18781273 |
ttggcaacgccgcagtagtgttccaaaattgtaacattttcgcaagaaagcctttagatggccaagcaaacatgatcacggcccaaggtcgaggtgaccc |
18781174 |
T |
|
| Q |
101 |
attccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttgacaagtacaaaaccttcttgggtaggcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18781173 |
attccaaaacactggaatttcattccacaattgtcaaattatggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggcct |
18781074 |
T |
|
| Q |
201 |
tggcaacaatattcgagagttatgatgatg |
230 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| |
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|
| T |
18781073 |
tggcaacaatattcaagagttatggtgatg |
18781044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 12802777 - 12802719
Alignment:
| Q |
63 |
caagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttc |
121 |
Q |
| |
|
||||| ||||||||||| ||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
12802777 |
caagcaaacatgatcacggcccaaggtcgtgatgacccatttcaaaacactggaatttc |
12802719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 8767090 - 8767130
Alignment:
| Q |
9 |
gccgcagtggttttccaaaattgtaacattttcgcaagaaa |
49 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||| |
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|
| T |
8767090 |
gccgcggtagttttgcaaaattgtaacattttcgcaagaaa |
8767130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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