View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_122 (Length: 239)
Name: NF6641_low_122
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_122 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 31338541 - 31338332
Alignment:
| Q |
18 |
caatgcgtttttggcggagctttggggagtactgtttgaaatatgtgagaaggatgagatatacagcagttgaattgaatgtagattatgttagtttgga |
117 |
Q |
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| T |
31338541 |
caatgcgtttttggcggagctttggggagtactgtttgaaatatgtgagaaggatgagatatacagcagttgaattgaatgtagattatgttagtttgga |
31338442 |
T |
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| Q |
118 |
gaagactataaaggaaggtgtgacagatagtcgcttgggtagagcgttagttaataaaattcgtcgcttattggagatggattggaacgttgttgtttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31338441 |
gaagactataaaggaaggtgtgacagatagtcgcttgggtagagcgttagttaataaaattcgtcgcttattggagatggattggaacgttgttgtttct |
31338342 |
T |
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| Q |
218 |
cattcatatc |
227 |
Q |
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|||||||||| |
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| T |
31338341 |
cattcatatc |
31338332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 21310203 - 21309993
Alignment:
| Q |
18 |
caatgcgtttttggcggagctttggggagtactg-----tttgaaatatgtgagaaggatgagatatacagcagttgaattgaatgtagattatgttagt |
112 |
Q |
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| T |
21310203 |
caatgcgtttgtggcggagctttggggagtgttggagggtctgagatatgtgagaaggatgggatatgcagcagtagaattgaatgtagattgtgttagt |
21310104 |
T |
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| Q |
113 |
ttggagaagactataaaggaaggtgtgacagatagtcgcttgggtagagcgttagttaataaaattcgtcgcttattggagatggattggaacgttgttg |
212 |
Q |
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| T |
21310103 |
gtggagaagactataaagaaaggtgtgacagatagtcgcttgggtagagcgctggttaaacaaattcgtcgttta----agatggattggtacgttgttg |
21310008 |
T |
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| Q |
213 |
tttctcattcatatc |
227 |
Q |
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| T |
21310007 |
tttctcattcatatc |
21309993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 47310404 - 47310488
Alignment:
| Q |
144 |
atagtcgcttgggtagagcgttagttaataaaattcgtcgcttattggagatggattggaacgttgttgtttctcattcatatca |
228 |
Q |
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| T |
47310404 |
atagtcgcttgggtcgagcgtcggtaaatcaaattcgtcacttgttggagattgattgaaatgttgaagtttttcactcatatca |
47310488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 4486419 - 4486259
Alignment:
| Q |
65 |
agaaggatgagatatacagcagttgaattgaatgtagattatgttagtttggagaagactataaaggaaggtgtgacagatagtcgcttgggtagagcgt |
164 |
Q |
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| T |
4486419 |
agaaggatgggatctagagcagttgaattgaatgtggattctattagtgtgaagaagactataaaggaaggtatgacagatagtcgtttgggtagagctt |
4486320 |
T |
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| Q |
165 |
tagttaataaaattcgtcgcttattggagatggattggaacgttgttgtttctcattcatat |
226 |
Q |
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| T |
4486319 |
tggttaataaaagaatttgc-tattagagatggattagaatgttgatgtttcttattcatat |
4486259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 50564825 - 50564998
Alignment:
| Q |
59 |
tatgtgagaaggatgagatatacagcagttgaattgaatgtagattatgttagtt----tggagaagactataaaggaaggtgtgacagatagtcgcttg |
154 |
Q |
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|||| |||||||||| ||| || || |||||||| |||||||||||||||| || ||||| | ||||||||||||||||||| |||||| || |
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| T |
50564825 |
tatgcgagaaggatgggatttagagtcgttgaattaaatgtagattatgttaattagtgtggagcgggatataaaggaaggtgtgacaaatagtcatttt |
50564924 |
T |
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| Q |
155 |
ggtagagcgttagttaataaaattcgtcgcttattggagatggattggaacgttgttgtttctcattcatatca |
228 |
Q |
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|||| | ||| ||||||||||| | || ||||||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
50564925 |
ggtacaatgttggttaataaaatccatcacttattggagatggattggaatgttgaagtttctcattcgtatca |
50564998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 228
Target Start/End: Complemental strand, 45088992 - 45088859
Alignment:
| Q |
95 |
aatgtagattatgttagtttggagaagactataaaggaaggtgtgacagatagtcgcttgggtagagcgttagttaataaaattcgtcgcttattggaga |
194 |
Q |
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|||||||||| ||||||| ||||| ||| |||||||||||| ||||| ||||||| ||| |||||| || ||||| | ||||| | |||||||| | | |
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| T |
45088992 |
aatgtagattctgttagtatggagcagattataaaggaaggcatgacatatagtcgtttgtgtagagtattggttaaaagaattctttgcttattgaaaa |
45088893 |
T |
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| Q |
195 |
tggattggaacgttgttgtttctcattcatatca |
228 |
Q |
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| T |
45088892 |
tagattggaatgttgaagtttctcattcatatca |
45088859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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