View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_125 (Length: 237)
Name: NF6641_low_125
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_125 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42790449 - 42790232
Alignment:
| Q |
1 |
ttattataattagctcctaattaagtactttattaatggttttagaactaactactaatgtgtattgtgcaggtttcatttgatttggtagaaaagtatt |
100 |
Q |
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| T |
42790449 |
ttattataattagctcctaa----gtactttattaatggttttagaactaactactaatgtgtattgtgcaggtttcatttgatttggtagaaaagtatt |
42790354 |
T |
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| Q |
101 |
tggaagtgcacccggaagattataatggtttcagagaaaatgcattatttcaagactatcatggacttaaatcattcagaactgcaatggcaagtttcat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42790353 |
tggaagtgcacccggaagattacaatggtttcagagaaaatgcattatttcaagactatcatggacttaaatcattcagaactgcaatggcaagtttcat |
42790254 |
T |
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| Q |
201 |
ggaacaaataagaggtggtaaa |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
42790253 |
ggaacaaataagaggtggtaaa |
42790232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42799989 - 42799772
Alignment:
| Q |
1 |
ttattataattagctcctaattaagtactttattaatggttttagaactaactactaatgtgtattgtgcaggtttcatttgatttggtagaaaagtatt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42799989 |
ttattataattagctcctaa----gtactttattaatggttttagaactaactactaatgtgtattgtgcaggtttcatttgatttggtagaaaagtatt |
42799894 |
T |
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| Q |
101 |
tggaagtgcacccggaagattataatggtttcagagaaaatgcattatttcaagactatcatggacttaaatcattcagaactgcaatggcaagtttcat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42799893 |
tggaagtgcacccggaagattacaatggtttcagagaaaatgcattatttcaagactatcatggacttaaatcattcagaactgcaatggcaagtttcat |
42799794 |
T |
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| Q |
201 |
ggaacaaataagaggtggtaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
42799793 |
ggaacaaataagaggtggtaaa |
42799772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 34567911 - 34567824
Alignment:
| Q |
128 |
gtttcagagaaaatgcattatttcaagactatcatggacttaaatcattcagaactgcaatggcaagtttcatggaacaaataagagg |
215 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |
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| T |
34567911 |
gttttagagataatgcattatttcaagactatcatggacttaaatcattcagaaaagcaatggcaagtttcatggaaaaaattagagg |
34567824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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