View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_126 (Length: 237)
Name: NF6641_low_126
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_126 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 37893990 - 37894220
Alignment:
| Q |
1 |
attgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttg |
100 |
Q |
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| T |
37893990 |
attgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttg |
37894089 |
T |
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| Q |
101 |
ttggtgcttgtgtttttggtcttgctgtttggtctctatgttaagaatgtaattaattcannnnnnncaggaggacacaaaaaccaagagttgtaatttg |
200 |
Q |
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| T |
37894090 |
ttggtgcttgtgtttttggtcttgctgtttggtctctatgttaagaatgtaattaattcatttttttcaggaggacacaaaaaccaagagttgtaatttg |
37894189 |
T |
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| Q |
201 |
attaattacaactcaattgtgtgatgatgtc |
231 |
Q |
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| T |
37894190 |
attaattacaactcaattgtgttatgatgtc |
37894220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 37189087 - 37189320
Alignment:
| Q |
1 |
attgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189087 |
attgactatggaaatggtttcaagacagagacaagaatatgtgaatgcattatgtggtttggttgatgaagttaagaagcagaagaagctggttaatttg |
37189186 |
T |
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| Q |
101 |
ttggtgcttgtgtttttggtcttgctgtttggtctctatgttaagaatgtaattaattca----nnnnnnncaggaggacacaaaaaccaagagttgtaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37189187 |
ttggtgcttgtgtttttggtcttgctgtttggtctctatgttaagaatgtaattaattcattttttttcttgaggaggacacaaaaaccaagagttgtaa |
37189286 |
T |
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| Q |
197 |
tttgattaattacaactcaattgtgtgatgatgtc |
231 |
Q |
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|||||||||| |||||||||||||| || ||||| |
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| T |
37189287 |
-ttgattaatttcaactcaattgtgttatcatgtc |
37189320 |
T |
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