View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6641_low_13 (Length: 577)
Name: NF6641_low_13
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_13 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Original strand, 33811001 - 33811562
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811001 |
atcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
33811100 |
T |
|
| Q |
115 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
214 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
33811101 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
33811200 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
314 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811201 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
33811300 |
T |
|
| Q |
315 |
ccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811301 |
ccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
33811400 |
T |
|
| Q |
415 |
tgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
514 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811401 |
tgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
33811500 |
T |
|
| Q |
515 |
caaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaacataatcctcac |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
33811501 |
caaaaccctctataaatagagaagagtttcagcaatgaaa-cacaccacaacacaatcctcac |
33811562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Original strand, 33815919 - 33816480
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815919 |
atcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
33816018 |
T |
|
| Q |
115 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
214 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
33816019 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
33816118 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
314 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816119 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
33816218 |
T |
|
| Q |
315 |
ccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816219 |
ccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
33816318 |
T |
|
| Q |
415 |
tgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
514 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816319 |
tgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
33816418 |
T |
|
| Q |
515 |
caaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaacataatcctcac |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
33816419 |
caaaaccctctataaatagagaagagtttcagcaatgaaa-cacaccacaacacaatcctcac |
33816480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 306 - 577
Target Start/End: Original strand, 33807638 - 33807908
Alignment:
| Q |
306 |
tgttggtttccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807638 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
33807737 |
T |
|
| Q |
406 |
attctaccatgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
505 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807738 |
attctaccatgtcagtaacaaattgacaaacttggcaatgggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
33807837 |
T |
|
| Q |
506 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaacataatcctcac |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
33807838 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaa-cacaccacaacacaatcctcac |
33807908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 4836462 - 4836172
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836462 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
4836363 |
T |
|
| Q |
115 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| | ||| | ||| |
|
|
| T |
4836362 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacacaaatgagaatggagcagacatgatgacaaaaccgctaccgaaa |
4836263 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgt |
308 |
Q |
| |
|
||||||||||||||||| ||| | ||||| || || | ||||||||||||||||| ||||| || |||| ||||||||||||||||||||| |
|
|
| T |
4836262 |
gagaagatagagttttgcaaacaagctgctggaatggtagcaaccccaaactaat-taagg--cattcccctatggctggagggggagaattgt |
4836172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 92 - 270
Target Start/End: Complemental strand, 24380105 - 24379927
Alignment:
| Q |
92 |
tcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagata |
191 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||||| |||| |||| || || || |||||||| ||||||||||| | |||||||| || | |
|
|
| T |
24380105 |
tcaaaacacaatgatgtgaggtatcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaataagaatggagccgaca |
24380006 |
T |
|
| Q |
192 |
tgatgacaaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatc |
270 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||| | ||||| || | |||||||||||||||||||| |
|
|
| T |
24380005 |
tgatgacaaaacctctatcaaaagagaagatagagttttgcaaacaagctgctggattggcagcaaccccaaactaatc |
24379927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 54968127 - 54967873
Alignment:
| Q |
16 |
tcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtat |
115 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || || ||||||||||| |||||||||||| |
|
|
| T |
54968127 |
tcaagaaagttatgttctctattgcgacagtcagagcgcaattcatctcagcaagaactcaacataccactccagatcaaaacacattgatgtgaggtat |
54968028 |
T |
|
| Q |
116 |
cattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaag |
215 |
Q |
| |
|
|| ||||| ||||||||||| || | |||| || || || |||||||| ||||||||||||| || ||||||||||||||||||||||||||| |||||| |
|
|
| T |
54968027 |
cactggattcgtgatgtgttggaaagtaaattgttgaaagtagagaaagttcacaccaatgagaacggagcagatatgatgacaaaagctctaccaaaag |
54967928 |
T |
|
| Q |
216 |
agaagatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatc |
270 |
Q |
| |
|
|||||||||||||||| ||| | ||||| || | |||||||||||||| ||||| |
|
|
| T |
54967927 |
agaagatagagttttgcaaacaagctgctggattggcagcaaccccaaattaatc |
54967873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 50603003 - 50603083
Alignment:
| Q |
489 |
gaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaacata |
569 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||| | || |||||||||||||| |
|
|
| T |
50603003 |
gaaccaagcatttaatgcttacggttcatttctctctataaatagagaagagcttcagcaaagcaaacacaccacaacata |
50603083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 2019 - 2274
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||| || ||||| ||||||||||| || ||||| || || || |||||||| || ||||||||||| |
|
|
| T |
2019 |
atcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcagcaagaactcaacatatcactccagatcaaaacatattgatgtgaggta |
2118 |
T |
|
| Q |
115 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
214 |
Q |
| |
|
||| ||||| ||||||||||| |||| |||| || || || |||||||| ||||||||||||| ||||||||||| |||||||| ||| ||||| ||||| |
|
|
| T |
2119 |
tcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgaccaaacctctaccaaaa |
2218 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatc |
270 |
Q |
| |
|
|||||||| |||||||| ||| | ||||| || | |||||||||||||||||||| |
|
|
| T |
2219 |
gagaagattgagttttgcaaacaagctgctggattggcagcaaccccaaactaatc |
2274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 22982057 - 22981841
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||| ||||| ||||| ||||||||||| ||||||||||| || || || |||||||| || |||||||| |
|
|
| T |
22982057 |
atcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggta |
22981958 |
T |
|
| Q |
115 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
214 |
Q |
| |
|
|| || || ||||||||| |||| |||| || || || |||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
22981957 |
ccactgtattaatgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaa |
22981858 |
T |
|
| Q |
215 |
gagaagatagagttttg |
231 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
22981857 |
gaaaagattgagttttg |
22981841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 23806351 - 23806567
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||| ||||| ||||| ||||||||||| ||||||||||| || || || |||||||| || |||||||| |
|
|
| T |
23806351 |
atcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggta |
23806450 |
T |
|
| Q |
115 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
214 |
Q |
| |
|
|| || || ||||||||| |||| |||| || || || |||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
23806451 |
ccactgtattaatgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaa |
23806550 |
T |
|
| Q |
215 |
gagaagatagagttttg |
231 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
23806551 |
gaaaagattgagttttg |
23806567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 1105201 - 1105112
Alignment:
| Q |
77 |
acataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaatt |
166 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||| || ||||||| |||| ||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
1105201 |
acataccatttaagatcaaaacacatcaatgtaagaaatcattgaatacatgacgtgttagagaataaactgctttaaatagagaaaatt |
1105112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 511 - 567
Target Start/End: Complemental strand, 31152298 - 31152242
Alignment:
| Q |
511 |
ggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaaca |
567 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||| | || |||||||||||| |
|
|
| T |
31152298 |
ggttcaaatctctctataaatagagaagagcttcagcaaagcaatcacaccacaaca |
31152242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 1105101 - 1104988
Alignment:
| Q |
198 |
caaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatctaaggatagtttccctttggctggagg |
297 |
Q |
| |
|
||||||||||| ||||| ||||| |||| |||| ||||| ||||||| | |||||| |||||| ||||||||| ||||||| | ||| ||| |||| |
|
|
| T |
1105101 |
caaaagctctaccaaaaaagaagttagatttttataaagcaattgcaggcttgacagcaatcccaaattaatctaagtatagttttcgtttagctagagg |
1105002 |
T |
|
| Q |
298 |
gggagaattgttgg |
311 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
1105001 |
gagataattgttgg |
1104988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 25003727 - 25003452
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||| || || |||||||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
25003727 |
atcaacaaagttatgttccctattgtgatagtcaaagtgcaattcacctcagaaataactcgacata-caatcaaggtc-aaacacatagatgtgaggta |
25003630 |
T |
|
| Q |
115 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
214 |
Q |
| |
|
| |||||||||||||||| | ||| ||||||| |||||||| ||||| ||||||| || || |||||||||||||| ||||| |||| |
|
|
| T |
25003629 |
---------atgtgatgtgttagagaa-agactactgcaaaaagagaaaa---acaccgatgacaaagggacaaatatgatgacaaaaactctaccaaat |
25003543 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaagaggctgcaggc-atagcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttgg |
311 |
Q |
| |
|
|| | || |||||||||| || | || ||| |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
25003542 |
ga------aaaggtttgtaaagaatatgaaagctata-cagcaaccccaaactaatttgaagatattttccctttggctggagggagagaattgttgg |
25003452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 14178325 - 14178355
Alignment:
| Q |
282 |
tccctttggctggagggggagaattgttggt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14178325 |
tccctttggctggagggggagaattgttggt |
14178355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 311
Target Start/End: Complemental strand, 28607548 - 28607519
Alignment:
| Q |
282 |
tccctttggctggagggggagaattgttgg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28607548 |
tccctttggctggagggggagaattgttgg |
28607519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 311
Target Start/End: Original strand, 12935055 - 12935084
Alignment:
| Q |
282 |
tccctttggctggagggggagaattgttgg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12935055 |
tccctttggctggagggggagaattgttgg |
12935084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University