View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_130 (Length: 231)
Name: NF6641_low_130
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_130 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 51067691 - 51067584
Alignment:
| Q |
120 |
tccttacctatagcaagcttctgtccattctatttctattataataaaaacttacaagaatatatagtaatggaaactgtgattgtaaaagatattgtga |
219 |
Q |
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| T |
51067691 |
tccttacctatagcaagcttctgtccattctatttctattataataaaaactttcaaga----atagtaatggaaactgtgattgtaaaagatattgtga |
51067596 |
T |
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| Q |
220 |
tcgtaggagctg |
231 |
Q |
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|||||||||||| |
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| T |
51067595 |
tcgtaggagctg |
51067584 |
T |
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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 51067755 - 51067711
Alignment:
| Q |
24 |
atatgagtggtgttgcatcaccttgaccttttgcccaattataata |
69 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51067755 |
atatcagtggtgttgcatcaccttgacc-tttgcccaattataata |
51067711 |
T |
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