View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_low_133 (Length: 229)

Name: NF6641_low_133
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_low_133
NF6641_low_133
[»] chr7 (37 HSPs)
chr7 (1-194)||(37284110-37284303)
chr7 (3-194)||(37289218-37289409)
chr7 (83-194)||(27479988-27480099)
chr7 (77-194)||(7158232-7158349)
chr7 (83-190)||(22661362-22661469)
chr7 (93-194)||(12929288-12929389)
chr7 (93-194)||(12930773-12930874)
chr7 (83-194)||(27480735-27480846)
chr7 (95-194)||(38643551-38643650)
chr7 (83-194)||(4227160-4227271)
chr7 (83-206)||(12644121-12644244)
chr7 (82-194)||(4226126-4226238)
chr7 (111-194)||(12643101-12643184)
chr7 (47-190)||(31695566-31695709)
chr7 (95-194)||(45915808-45915907)
chr7 (83-194)||(47558031-47558142)
chr7 (95-194)||(38644660-38644759)
chr7 (83-194)||(45914527-45914636)
chr7 (58-190)||(31694476-31694608)
chr7 (75-194)||(43938158-43938277)
chr7 (93-194)||(43937895-43937996)
chr7 (79-190)||(40021496-40021607)
chr7 (79-180)||(7159197-7159297)
chr7 (93-166)||(37563636-37563709)
chr7 (82-182)||(40022516-40022615)
chr7 (93-172)||(37563377-37563456)
chr7 (75-172)||(5636049-5636145)
chr7 (75-166)||(19979980-19980070)
chr7 (92-194)||(5280273-5280375)
chr7 (126-176)||(5280586-5280636)
chr7 (75-181)||(12931002-12931108)
chr7 (128-194)||(15827915-15827981)
chr7 (93-194)||(27558134-27558235)
chr7 (93-194)||(34454762-34454863)
chr7 (75-207)||(12929518-12929650)
chr7 (75-159)||(44545859-44545943)
chr7 (77-145)||(47738979-47739047)
[»] chr3 (35 HSPs)
chr3 (1-194)||(22736596-22736789)
chr3 (1-181)||(44476063-44476243)
chr3 (4-151)||(22735403-22735550)
chr3 (1-190)||(44481859-44482048)
chr3 (83-199)||(45279272-45279388)
chr3 (83-194)||(48189087-48189198)
chr3 (83-199)||(11026620-11026736)
chr3 (83-194)||(2944654-2944765)
chr3 (83-190)||(37249204-37249311)
chr3 (83-181)||(1756564-1756662)
chr3 (83-181)||(48188392-48188490)
chr3 (83-190)||(43105822-43105929)
chr3 (83-190)||(45278549-45278656)
chr3 (91-194)||(1757300-1757403)
chr3 (83-190)||(37249786-37249892)
chr3 (84-178)||(43105250-43105344)
chr3 (83-194)||(32717093-32717204)
chr3 (108-194)||(29193006-29193092)
chr3 (83-169)||(11025963-11026049)
chr3 (83-190)||(29192040-29192147)
chr3 (83-194)||(2943914-2944025)
chr3 (75-166)||(22129035-22129126)
chr3 (75-159)||(30890243-30890327)
chr3 (93-172)||(10998155-10998234)
chr3 (128-194)||(11312929-11312995)
chr3 (128-194)||(21300327-21300393)
chr3 (128-194)||(53037151-53037217)
chr3 (95-181)||(55036683-55036769)
chr3 (93-194)||(1741388-1741489)
chr3 (75-172)||(21255795-21255892)
chr3 (75-166)||(46670519-46670610)
chr3 (75-181)||(40256888-40256994)
chr3 (93-194)||(53037028-53037129)
chr3 (75-171)||(28310612-28310708)
chr3 (93-181)||(55036951-55037039)
[»] chr8 (49 HSPs)
chr8 (1-194)||(33497522-33497715)
chr8 (1-169)||(33497042-33497210)
chr8 (10-194)||(38598965-38599149)
chr8 (83-194)||(34665771-34665882)
chr8 (75-195)||(1231526-1231646)
chr8 (38-194)||(7393088-7393244)
chr8 (83-194)||(34214516-34214628)
chr8 (93-205)||(25288074-25288187)
chr8 (83-194)||(34213765-34213876)
chr8 (83-169)||(34666529-34666614)
chr8 (84-194)||(1232788-1232896)
chr8 (71-190)||(24377186-24377305)
chr8 (37-184)||(24378939-24379085)
chr8 (79-194)||(27437503-27437618)
chr8 (47-190)||(29574747-29574890)
chr8 (76-190)||(4970130-4970244)
chr8 (77-194)||(4463408-4463525)
chr8 (77-194)||(27436564-27436681)
chr8 (58-153)||(7392250-7392345)
chr8 (58-190)||(29575848-29575980)
chr8 (75-194)||(40422424-40422543)
chr8 (75-194)||(36623617-36623736)
chr8 (75-194)||(43866712-43866831)
chr8 (90-176)||(9632347-9632433)
chr8 (93-194)||(7675-7776)
chr8 (49-141)||(4462179-4462271)
chr8 (122-190)||(36574822-36574890)
chr8 (93-172)||(23424794-23424873)
chr8 (75-162)||(25287825-25287912)
chr8 (75-181)||(29190423-29190529)
chr8 (128-194)||(37342976-37343042)
chr8 (128-194)||(43866835-43866901)
chr8 (93-194)||(36623353-36623454)
chr8 (128-181)||(36623560-36623613)
chr8 (75-172)||(37343046-37343143)
chr8 (196-229)||(39030452-39030485)
chr8 (93-181)||(27857024-27857112)
chr8 (126-194)||(38600265-38600333)
chr8 (93-181)||(41801830-41801918)
chr8 (95-194)||(547432-547530)
chr8 (126-181)||(20096339-20096394)
chr8 (75-210)||(31689880-31690015)
chr8 (123-182)||(36576029-36576088)
chr8 (128-194)||(547629-547695)
chr8 (75-181)||(20096034-20096140)
chr8 (93-199)||(43866993-43867099)
chr8 (93-194)||(11478146-11478247)
chr8 (93-166)||(11478427-11478500)
chr8 (75-172)||(40525530-40525627)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-194)||(73110-73303)
[»] chr4 (46 HSPs)
chr4 (1-194)||(55012995-55013187)
chr4 (83-194)||(38814315-38814426)
chr4 (83-190)||(38982584-38982691)
chr4 (83-194)||(38813555-38813666)
chr4 (83-194)||(56556583-56556694)
chr4 (83-206)||(56557313-56557436)
chr4 (83-194)||(52816411-52816522)
chr4 (83-194)||(52815664-52815775)
chr4 (91-194)||(53477076-53477179)
chr4 (57-192)||(54590146-54590281)
chr4 (79-199)||(54591560-54591682)
chr4 (108-194)||(23454955-23455041)
chr4 (83-194)||(23455677-23455788)
chr4 (77-194)||(13336820-13336937)
chr4 (47-190)||(22882279-22882422)
chr4 (47-190)||(22933943-22934086)
chr4 (79-190)||(9254411-9254522)
chr4 (75-195)||(32846362-32846482)
chr4 (75-199)||(47862148-47862272)
chr4 (75-194)||(8286933-8287052)
chr4 (75-194)||(22249997-22250116)
chr4 (75-205)||(12691396-12691526)
chr4 (75-181)||(35730925-35731031)
chr4 (93-194)||(53559669-53559770)
chr4 (93-194)||(54961432-54961533)
chr4 (58-190)||(22881172-22881304)
chr4 (58-190)||(22932836-22932968)
chr4 (75-194)||(37678112-37678231)
chr4 (128-194)||(22249927-22249993)
chr4 (93-166)||(20086466-20086539)
chr4 (93-194)||(33294425-33294526)
chr4 (93-166)||(47862434-47862507)
chr4 (93-194)||(53475832-53475933)
chr4 (126-194)||(8287248-8287316)
chr4 (91-138)||(10128763-10128810)
chr4 (75-210)||(13872333-13872468)
chr4 (90-181)||(50246137-50246228)
chr4 (75-172)||(27813072-27813169)
chr4 (93-194)||(47981918-47982019)
chr4 (90-166)||(489463-489539)
chr4 (90-166)||(515255-515331)
chr4 (93-181)||(12691687-12691775)
chr4 (126-194)||(19740861-19740929)
chr4 (93-181)||(34238484-34238572)
chr4 (126-194)||(37677849-37677917)
chr4 (93-181)||(54961713-54961801)
[»] chr1 (48 HSPs)
chr1 (1-190)||(32619389-32619578)
chr1 (1-181)||(32622262-32622442)
chr1 (3-199)||(51935107-51935303)
chr1 (83-190)||(46282781-46282888)
chr1 (37-190)||(32238704-32238859)
chr1 (83-194)||(46282072-46282183)
chr1 (83-194)||(49093042-49093153)
chr1 (83-190)||(50062936-50063043)
chr1 (57-194)||(2828194-2828331)
chr1 (83-157)||(49093801-49093875)
chr1 (83-152)||(50062246-50062315)
chr1 (76-190)||(6345618-6345732)
chr1 (95-192)||(25064936-25065033)
chr1 (95-192)||(25065958-25066055)
chr1 (95-194)||(13295136-13295235)
chr1 (123-194)||(13295608-13295679)
chr1 (77-190)||(6344260-6344373)
chr1 (79-194)||(2829523-2829645)
chr1 (75-199)||(5183770-5183894)
chr1 (75-166)||(10019637-10019728)
chr1 (75-194)||(24701533-24701652)
chr1 (75-195)||(29980902-29981022)
chr1 (78-166)||(46544998-46545086)
chr1 (75-194)||(1040299-1040418)
chr1 (75-194)||(1047205-1047324)
chr1 (75-194)||(2953728-2953847)
chr1 (93-208)||(29043037-29043152)
chr1 (75-194)||(46849922-46850041)
chr1 (128-194)||(29042879-29042945)
chr1 (93-194)||(19755687-19755788)
chr1 (75-199)||(5926785-5926909)
chr1 (75-194)||(739220-739339)
chr1 (75-194)||(37152802-37152921)
chr1 (76-190)||(52563656-52563770)
chr1 (93-194)||(1047486-1047587)
chr1 (93-166)||(25414873-25414946)
chr1 (93-194)||(26953102-26953203)
chr1 (93-181)||(5926533-5926621)
chr1 (118-166)||(28534820-28534868)
chr1 (93-181)||(49002890-49002978)
chr1 (47-182)||(36381375-36381509)
chr1 (75-194)||(48380682-48380801)
chr1 (75-194)||(49003139-49003258)
chr1 (93-194)||(6056660-6056762)
chr1 (75-181)||(33347680-33347786)
chr1 (128-194)||(46849852-46849918)
chr1 (75-172)||(33030357-33030454)
chr1 (93-166)||(37152567-37152640)
[»] chr5 (43 HSPs)
chr5 (1-190)||(21977923-21978112)
chr5 (1-181)||(21972104-21972283)
chr5 (1-194)||(8654108-8654302)
chr5 (57-194)||(14744692-14744829)
chr5 (83-194)||(20072857-20072968)
chr5 (83-190)||(36476770-36476877)
chr5 (83-190)||(36477364-36477471)
chr5 (83-194)||(39181058-39181169)
chr5 (83-190)||(16532898-16533005)
chr5 (83-194)||(20072122-20072233)
chr5 (84-194)||(22870451-22870561)
chr5 (83-199)||(39181784-39181900)
chr5 (83-194)||(16533613-16533724)
chr5 (111-194)||(31107932-31108015)
chr5 (83-184)||(22869616-22869717)
chr5 (83-194)||(20856933-20857044)
chr5 (83-194)||(20857535-20857646)
chr5 (76-190)||(8673739-8673853)
chr5 (79-194)||(21978955-21979070)
chr5 (93-157)||(39402146-39402210)
chr5 (75-195)||(25253086-25253206)
chr5 (75-195)||(25316876-25316996)
chr5 (75-194)||(14745449-14745568)
chr5 (75-194)||(37944995-37945114)
chr5 (95-192)||(31108338-31108434)
chr5 (75-194)||(7015773-7015892)
chr5 (90-181)||(21260879-21260970)
chr5 (75-194)||(22024134-22024253)
chr5 (75-194)||(32052488-32052607)
chr5 (75-194)||(33735577-33735696)
chr5 (93-194)||(25253368-25253469)
chr5 (93-194)||(25317159-25317260)
chr5 (93-166)||(33735342-33735415)
chr5 (75-181)||(22533654-22533760)
chr5 (93-194)||(7015509-7015610)
chr5 (74-195)||(18934713-18934834)
chr5 (75-119)||(21978167-21978211)
chr5 (131-181)||(31118969-31119019)
chr5 (93-166)||(14745595-14745668)
chr5 (75-208)||(16118215-16118348)
chr5 (93-166)||(32052253-32052326)
chr5 (90-166)||(8323085-8323161)
chr5 (165-208)||(19892294-19892338)
[»] chr2 (40 HSPs)
chr2 (1-206)||(20101758-20101963)
chr2 (57-194)||(20103107-20103243)
chr2 (75-194)||(24387352-24387471)
chr2 (83-194)||(29957818-29957929)
chr2 (83-205)||(20983249-20983371)
chr2 (91-194)||(20982525-20982628)
chr2 (83-203)||(25624421-25624541)
chr2 (83-194)||(25623289-25623400)
chr2 (9-183)||(23206322-23206496)
chr2 (9-183)||(23677926-23678100)
chr2 (84-194)||(29958536-29958646)
chr2 (115-194)||(24388276-24388355)
chr2 (79-184)||(19620777-19620882)
chr2 (83-168)||(21103108-21103193)
chr2 (122-190)||(43236509-43236577)
chr2 (75-194)||(9694006-9694125)
chr2 (75-181)||(16367227-16367333)
chr2 (9-159)||(23183635-23183784)
chr2 (9-159)||(23594892-23595041)
chr2 (75-181)||(28599441-28599547)
chr2 (75-194)||(1149938-1150057)
chr2 (95-194)||(10446833-10446932)
chr2 (75-194)||(17366627-17366746)
chr2 (93-194)||(20911131-20911232)
chr2 (122-190)||(43237747-43237815)
chr2 (93-166)||(16366992-16367065)
chr2 (93-194)||(32519156-32519257)
chr2 (77-145)||(13646130-13646198)
chr2 (77-145)||(13652075-13652143)
chr2 (93-172)||(1150219-1150298)
chr2 (75-194)||(22309695-22309814)
chr2 (122-172)||(7981070-7981120)
chr2 (128-181)||(17580452-17580505)
chr2 (75-192)||(18477140-18477257)
chr2 (115-203)||(33882892-33882981)
chr2 (75-159)||(5608858-5608942)
chr2 (122-190)||(7983837-7983905)
chr2 (93-137)||(19619584-19619628)
chr2 (98-190)||(33881580-33881672)
chr2 (90-166)||(41846671-41846747)
[»] scaffold0182 (2 HSPs)
scaffold0182 (1-194)||(13135-13328)
scaffold0182 (1-194)||(14284-14476)
[»] chr6 (28 HSPs)
chr6 (1-194)||(17784291-17784484)
chr6 (83-199)||(33399962-33400078)
chr6 (83-181)||(1661418-1661516)
chr6 (85-194)||(33401116-33401225)
chr6 (83-194)||(14657197-14657308)
chr6 (83-194)||(4116800-4116911)
chr6 (83-194)||(4117535-4117646)
chr6 (83-194)||(14656481-14656592)
chr6 (111-189)||(8427381-8427459)
chr6 (79-194)||(8427201-8427316)
chr6 (75-195)||(23291744-23291864)
chr6 (75-194)||(13480209-13480328)
chr6 (93-159)||(5064371-5064437)
chr6 (75-172)||(5064599-5064696)
chr6 (75-195)||(3299823-3299943)
chr6 (93-181)||(32337578-32337666)
chr6 (75-194)||(7612549-7612668)
chr6 (77-172)||(32337833-32337928)
chr6 (93-159)||(20994973-20995039)
chr6 (93-194)||(13480490-13480591)
chr6 (93-194)||(15819772-15819873)
chr6 (93-194)||(30234874-30234975)
chr6 (75-194)||(737961-738080)
chr6 (75-181)||(20774103-20774209)
chr6 (93-199)||(23292026-23292132)
chr6 (93-181)||(9607598-9607686)
chr6 (126-194)||(16704624-16704692)
chr6 (75-159)||(31879493-31879577)
[»] scaffold0009 (2 HSPs)
scaffold0009 (57-206)||(260990-261139)
scaffold0009 (95-194)||(262441-262540)
[»] scaffold1493 (2 HSPs)
scaffold1493 (93-205)||(582-695)
scaffold1493 (93-162)||(875-944)
[»] scaffold0347 (2 HSPs)
scaffold0347 (95-194)||(13610-13709)
scaffold0347 (95-193)||(14593-14691)
[»] scaffold0233 (1 HSPs)
scaffold0233 (75-166)||(8462-8553)
[»] scaffold0206 (1 HSPs)
scaffold0206 (75-194)||(10326-10445)
[»] scaffold0202 (1 HSPs)
scaffold0202 (75-181)||(14249-14355)
[»] scaffold0321 (1 HSPs)
scaffold0321 (93-194)||(10663-10764)
[»] scaffold0279 (1 HSPs)
scaffold0279 (93-194)||(10854-10955)
[»] scaffold0201 (1 HSPs)
scaffold0201 (75-159)||(14157-14241)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 37284303 - 37284110
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  37284303 ctgctgacgtgtcctgacaaaactccattcaccaaatgccacgtatctaattaccctccacctcaacaaatttttgtaattaggacgaattttaaaatga 37284204  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| || |||||||||    
T  37284203 ttagtaattgcaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaaagcatatttaagc 37284110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 37289218 - 37289409
Alignment:
Q  3 gctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgatt 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  37289218 gctgacgtgtcctgacaaaactccattcaccaaatgccacgtatctaattaccctccacctcaacaaatttttgtaattaggacgaattttaaaatgatt 37289317  T
Q  103 agtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||| || |||||||||    
T  37289318 agtaattgcaggggcaaaatgggaggattagtaagctcagggatgaaaaaccaaatggcctataattacagggatgaaaagcatatttaagc 37289409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 27480099 - 27479988
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  |||||||||||||| ||||||||     
T  27480099 ggacgaactttcaaatgattagtaattacaggggcaaaataggaggattagtaagctcagggatgaaaaatcaagcggcctataattgcagggatgaaaa 27480000  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  27479999 gcatatttaagc 27479988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 7158349 - 7158232
Alignment:
Q  77 taattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagga 176  Q
    ||||||||||  ||| ||||||||||| || ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| | |||    
T  7158349 taattaggaccgattctcaaatgattaatatttacaggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaatggcctataattgtaggga 7158250  T
Q  177 tgaaatgcgtatttaagc 194  Q
    |||||||| |||||||||    
T  7158249 tgaaatgcatatttaagc 7158232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 22661469 - 22661362
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||     
T  22661469 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcaaggatgaaaaatcaaacggcctataattacagggatgaaaa 22661370  T
Q  183 gcgtattt 190  Q
    || |||||    
T  22661369 gcatattt 22661362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 12929389 - 12929288
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||    
T  12929389 tcaaatgattaatatttgcaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatagcctatatttgcagggatgaaatgcatatttaa 12929290  T
Q  193 gc 194  Q
    ||    
T  12929289 gc 12929288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 12930874 - 12930773
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  12930874 tcaaatgattaatatttgcaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaatgacctataattgcagggatgaaatgcatatttaa 12930775  T
Q  193 gc 194  Q
    ||    
T  12930774 gc 12930773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 27480735 - 27480846
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  ||| ||||||||||||||| ||||||||||| || ||||||||     
T  27480735 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaaaatcaaggatgaaaaatcaaacggcctataattacagggatgaaaa 27480834  T
Q  183 gcgtatttaagc 194  Q
     | |||||||||    
T  27480835 acatatttaagc 27480846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 38643650 - 38643551
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |  ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  38643650 aaatgattaatttttacaggagcaaaatgggaggattagtaaggtcaaggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagc 38643551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 4227160 - 4227271
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||| ||||| ||| |  |||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||||    
T  4227160 ggacgaaattttaaatggttaatttttacagggacaaaatgggaggattagtaagctcaaggatgaaaaatcaaatggcctataattacagggatgaaat 4227259  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  4227260 gcatatttaagc 4227271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 12644121 - 12644244
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||| ||||||||| |  ||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |||||  | |||||||||    
T  12644121 ggacgaaattttaaatgattaatttttacaggagtaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctgtaattatagggatgaaat 12644220  T
Q  183 gcgtatttaagctaaaataaaata 206  Q
    || |||||||||| ||| ||||||    
T  12644221 gcatatttaagcttaaaaaaaata 12644244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 4226238 - 4226126
Alignment:
Q  82 aggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    |||||||| ||| ||||||||| |  ||||||||||||||||| |||||||||||| ||| || |||| ||||||||||||||||||| || ||||||||    
T  4226238 aggacgaaattttaaatgattaatttttacaggggcaaaatggaaggattagtaagctcatggttgaagaatcaaatggcctataattacagggatgaaa 4226139  T
Q  182 tgcgtatttaagc 194  Q
    ||| |||||||||    
T  4226138 tgcatatttaagc 4226126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 12643184 - 12643101
Alignment:
Q  111 caggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    |||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  12643184 caggggtaaaatgggaggattagtaagctcagagatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagc 12643101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 31695566 - 31695709
Alignment:
Q  47 ctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggat 146  Q
    ||||||||||||||||||||||||    ||| |||||||| || |||||| ||||||  |||| |||||  ||||||| |||||||||||||| ||||||    
T  31695566 ctaattaccctccacctcagcaaaaaaatgtgattaggaccaaatttcaagtgattaacaattgcagggaaaaaatggaaggattagtaagtttagggat 31695665  T
Q  147 gaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||  ||||||| |||||| ||||| ||||||||||| |||||    
T  31695666 gaaatttcaaatgacctatatttgcagggatgaaatgcatattt 31695709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 45915808 - 45915907
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |  ||||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  45915808 aaatgattaatttttacaggggtaaaataggaggattagtaagcttagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagc 45915907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 47558142 - 47558031
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||| ||||| ||| |  |||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||  |  ||||||||    
T  47558142 ggacgaaattttaaatggttaatttttacaggggcaaaatgggaggattagtaaactcagggatgaaaaatcaaatagcctataattaaagagatgaaat 47558043  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  47558042 gcatatttaagc 47558031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 38644660 - 38644759
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |  ||||| || |||||||| ||||||| |||| | |||||| |||||||||||| |||||||||||||| ||||||||| |||||||||    
T  38644660 aaatgattaatttttacaaggtcaaaatggaaggattaataagcttagggataaaaaatcaaatgacctataattgcaagaatgaaatgcatatttaagc 38644759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 45914636 - 45914527
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||| ||||||||| |  |||||||| ||||||| ||| ||||||||| | ||||||||||||||||||||||||||||| ||  ||||||||    
T  45914636 ggacgaaattttaaatgattaatttttacaggg-caaaatgagag-attagtaagcttagggatgaaaaatcaaatggcctataattacagagatgaaat 45914539  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  45914538 gcatatttaagc 45914527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 31694608 - 31694476
Alignment:
Q  58 ccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaa 157  Q
    |||||||||||||    |||||||||||| || |||||| ||||||  |||| || ||  | ||||||||||||||||| || ||||||||||  |||||    
T  31694608 ccacctcagcaaaaaaatgtaattaggaccaaatttcaagtgattaacaattgcatggaaagaatgggaggattagtaaatttagggatgaaatttcaaa 31694509  T
Q  158 tggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||| ||||| ||||| ||||||||||| |||||    
T  31694508 tggactatatttgcagggatgaaatgcatattt 31694476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 43938158 - 43938277
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| ||||||||| |||| |||||||    
T  43938158 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggcttatatttgcaag 43938257  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  43938258 gacgaaagacatatttaagc 43938277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 43937996 - 43937895
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||||||||||| ||||||| |||||| || |||||| ||||  | |||||||    
T  43937996 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaatgacctatatttacaaggacgaaagacatatttaa 43937897  T
Q  193 gc 194  Q
    ||    
T  43937896 gc 43937895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 40021607 - 40021496
Alignment:
Q  79 attaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatg 178  Q
    ||||||||||||||||||||| ||| || || ||| |||||||| | || ||||| ||||| | ||||||||  ||||||| |||||| || || |||||    
T  40021607 attaggacgaattttcaaatgtttaatatttgcagtggcaaaatagaagaattagcaagtttatggatgaaatttcaaatgacctatatttacagggatg 40021508  T
Q  179 aaatgcgtattt 190  Q
    |||||| |||||    
T  40021507 aaatgcatattt 40021496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 7159197 - 7159297
Alignment:
Q  79 attaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatg 178  Q
    |||||||||||  |||||||||||| || || |||||  ||||||||||||||||||| |||||| | ||||| |||||||  ||||| ||||| |||||    
T  7159197 attaggacgaaaattcaaatgattaatatttgcagggt-aaaatgggaggattagtaacttcaggaacgaaaattcaaatgatctatatttgcagggatg 7159295  T
Q  179 aa 180  Q
    ||    
T  7159296 aa 7159297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 37563636 - 37563709
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    ||||| ||||| || || |||||||||| ||| ||||||||||| |||||||| ||||| ||||||||||||||    
T  37563636 tcaaaagattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaatggcctata 37563709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 40022516 - 40022615
Alignment:
Q  82 aggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    |||||||||| ||||||| ||| || || ||| | |||||||| |||||||||||| ||||||||||||  |||||| | ||||| ||||| ||||||||    
T  40022516 aggacgaattctcaaatgcttaatatttgcagtgacaaaatggaaggattagtaagatcagggatgaaatttcaaat-gactatatttgcagggatgaaa 40022614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 37563456 - 37563377
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    ||||||||||| || || |||||||| | | | ||||||||||| |||||||| ||||| |||||||||||||| |||||    
T  37563456 tcaaatgattaatatttgcaggggcagattagaaggattagtaaattcagggacgaaaattcaaatggcctatatttgca 37563377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 5636145 - 5636049
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    |||||||||||| | |||||||||||||| || || ||  |||||| ||| ||||||||||| || ||||| ||||| ||||||| |||||| |||||    
T  5636145 tgtaattaggaccatttttcaaatgattaatatttgcaatggcaaa-tggaaggattagtaactttagggacgaaaattcaaatgacctatatttgca 5636049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 19980070 - 19979980
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    |||||||| ||| | |||||||||||||| || || ||  |||||||||| | ||||||||| |||| ||||||||| ||||||| ||||||    
T  19980070 tgtaattatgaccatttttcaaatgattaatatttgcaacggcaaaatggaatgattagtaacttca-ggatgaaaattcaaatgacctata 19979980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 5280375 - 5280273
Alignment:
Q  92 ttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattta 191  Q
    ||||||| |||| || |||||| |||| | ||| ||||||||||| |||||  | ||||| |||||||||||||| ||||| ||| ||||  | ||||||    
T  5280375 ttcaaattattaatatttacagtggcagattggaaggattagtaacttcagtaacgaaaattcaaatggcctatatttgcagggacgaaagacttattta 5280276  T
Q  192 agc 194  Q
    |||    
T  5280275 agc 5280273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 5280586 - 5280636
Alignment:
Q  126 aggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagga 176  Q
    ||||||||||| |||||||| ||||| ||||||| |||||| |||||||||    
T  5280586 aggattagtaacttcagggacgaaaattcaaatgacctatatttgcaagga 5280636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 12931002 - 12931108
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || || ||||| | ||| ||||||||||| |||||||| ||||| ||||||| || ||| ||||| |    
T  12931002 tgtaattaggaccaaaagtcaaatgattaatatttgcatgggcagattggaaggattagtaacttcagggacgaaaattcaaatgaccaatatttgcagg 12931101  T
Q  175 gatgaaa 181  Q
    || ||||    
T  12931102 gacgaaa 12931108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 15827981 - 15827915
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||||  | |||||||||    
T  15827981 gattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaagc 15827915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 27558134 - 27558235
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || ||  |||||||||| ||||||||||| |||  ||| ||||| ||||||| |||||| ||||| ||| ||||  | |||||||    
T  27558134 tcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttcgtggacgaaaattcaaatgacctatatttgcagggacgaaagacctatttaa 27558233  T
Q  193 gc 194  Q
    ||    
T  27558234 gc 27558235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 34454762 - 34454863
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||  || |||||||| |||||||| ||||| |||||||  ||||| ||||| ||||||||  | |||||||    
T  34454762 tcaaatgattaatatttgcaggggcagattgaaagaattagtaacttcagggacgaaaattcaaatgatctatatttgcagggatgaaagtcctatttaa 34454861  T
Q  193 gc 194  Q
    ||    
T  34454862 gc 34454863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 12929518 - 12929650
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || || ||||| | ||| ||||||||| | |||||||| | ||| ||||||| || ||| ||||| |    
T  12929518 tgtaattaggaccaaaagtcaaatgattaatatttgcacgggcagattggaaggattagtcacttcagggacggaaattcaaatgaccaatatttgcagg 12929617  T
Q  175 gatgaaatgcgtatttaagctaaaataaaataa 207  Q
    || ||||  | |||||||||  |||||||||||    
T  12929618 gacgaaagacatatttaagcctaaataaaataa 12929650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 44545859 - 44545943
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatg 159  Q
    |||||||||||| | |||| ||||||||| || || ||  || ||||| | ||||||||||| |||||||| ||||| |||||||    
T  44545859 tgtaattaggaccatttttaaaatgattaatatttgcaatggtaaaattgaaggattagtaacttcagggacgaaaattcaaatg 44545943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 47738979 - 47739047
Alignment:
Q  77 taattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcaggga 145  Q
    |||||||||| || ||| || |||||| || || |||||||||| ||||||||||||||| | ||||||    
T  47738979 taattaggaccaaattttaagtgattaatatttgcaggggcaaattgggaggattagtaaatacaggga 47739047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 22736596 - 22736789
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22736596 ctgctgatgtgtcctgacaaaatcccattcaccaaatgccacgtagctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 22736695  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||||||  | |||||||||    
T  22736696 ttagtaattacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatgacctataattacagggatgaaaaacatatttaagc 22736789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 44476243 - 44476063
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    |||||||||||||||| |||||| ||| |||| || ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  44476243 ctgctgatgtgtcctgccaaaaccccagtcactaagtgccacgtagctaatcaccctccacctcagcaaaattttgtaattaggacgaattttcaaatga 44476144  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||    
T  44476143 ttagtaattacgggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcccataattacagggatgaaa 44476063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 22735550 - 22735403
Alignment:
Q  4 ctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgatta 103  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22735550 ctgatgtgtcctgacaaaaccccattcaccaaatgccacgtagctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgatta 22735451  T
Q  104 gtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaa 151  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||    
T  22735450 gtaattacaggggcaaaatgggaggattagtaagcttagggatgaaaa 22735403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 44481859 - 44482048
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    |||||||||||||||| |||||| ||| |||| || ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  44481859 ctgctgatgtgtcctgccaaaaccccagtcactaagtgccacgtagctaatcaccctccacctcagcaaaattttgtaattaggacgaattttcaaatga 44481958  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| || |||||||| || |||||    
T  44481959 ttagtaattacaggggcaaaatgggaggattagtaagctcatggatgaaaaatcaaatggcccataattacagggatgaaaagcatattt 44482048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 45279272 - 45279388
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     
T  45279272 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 45279371  T
Q  183 gcgtatttaagctaaaa 199  Q
    || ||||||||| ||||    
T  45279372 gcatatttaagccaaaa 45279388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 48189087 - 48189198
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||     
T  48189087 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagctcagggatgaaaaatcaaacggcctataattacaaggatgaaaa 48189186  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  48189187 gcatatttaagc 48189198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 11026620 - 11026736
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| || ||||||||     
T  11026620 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattggtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 11026719  T
Q  183 gcgtatttaagctaaaa 199  Q
    || ||||||||| ||||    
T  11026720 gcatatttaagccaaaa 11026736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 2944654 - 2944765
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     
T  2944654 ggacgaactttcaaatgattagtaattacaggggcaaaatggatggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 2944753  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  2944754 gcatatttaagc 2944765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 37249311 - 37249204
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||||||||     
T  37249311 ggacgaactttcaaatgattagtaattacaggggcaaaatgggaggattaataagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaa 37249212  T
Q  183 gcgtattt 190  Q
    || |||||    
T  37249211 gcatattt 37249204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 1756662 - 1756564
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||    
T  1756662 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataattacaaggatgaaa 1756564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 48188490 - 48188392
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||    
T  48188490 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaa 48188392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 43105822 - 43105929
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     
T  43105822 ggacgaactttcaaatgattagtaattacaggggcaaaatgaaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 43105921  T
Q  183 gcgtattt 190  Q
     |||||||    
T  43105922 acgtattt 43105929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 45278656 - 45278549
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||     
T  45278656 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaaattcagggatgaaaaatcaaacggcctataattacagggatgaaaa 45278557  T
Q  183 gcgtattt 190  Q
    || |||||    
T  45278556 gcatattt 45278549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 91 - 194
Target Start/End: Original strand, 1757300 - 1757403
Alignment:
Q  91 tttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||  | |||||    
T  1757300 tttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataattacagggatgaaaatcatattt 1757399  T
Q  191 aagc 194  Q
    ||||    
T  1757400 aagc 1757403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 37249786 - 37249892
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||     
T  37249786 ggacgaactttcaaatgattagtaattacaagggcagaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattgc-aggatgaaaa 37249884  T
Q  183 gcgtattt 190  Q
    || |||||    
T  37249885 gcatattt 37249892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 43105344 - 43105250
Alignment:
Q  84 gacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatg 178  Q
    |||||| ||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  43105344 gacgaactttcaaaagattagtaattacaggggcaaaatgaaaggattagtaagttcagggatgaaaaatcaaacggcctataattacaaggatg 43105250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 32717093 - 32717204
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||| ||||||||| |  ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| || |||||||||    
T  32717093 ggacgaaattttaaatgattaatttttacaggggcaaaatggaaggattagtaagtttagggatgaaaaatcaaatgacctataattacagggatgaaat 32717192  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  32717193 gcatatttaagc 32717204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 29193006 - 29193092
Alignment:
Q  108 ttacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  29193006 ttacaggggcgaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagc 29193092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 11026049 - 11025963
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataatt 169  Q
    ||||||| |||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  11026049 ggacgaactttcaaatgattagtaattatagaggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcttataatt 11025963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 29192147 - 29192040
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||| ||||||||| |  |||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||||| || |||||||||    
T  29192147 ggacgaaattttaaatgattaatttttacaggggcaaaacggaaggattagtaagctcaggaatgaaaaatcaaatggcctataattacagggatgaaat 29192048  T
Q  183 gcgtattt 190  Q
    || |||||    
T  29192047 gcatattt 29192040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 2944025 - 2943914
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggat-gaaa 181  Q
    ||||||| |||||||||||||    ||||||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||| |||| ||||    
T  2944025 ggacgaactttcaaatgattaacttttacaggggcaaaataggaggattagtaagctca-ggatgaaaaatcaaacggcctataattgcagggatagaaa 2943927  T
Q  182 tgcgtatttaagc 194  Q
     || |||||||||    
T  2943926 agcatatttaagc 2943914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 22129126 - 22129035
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    |||||||||||||||   ||||||||||| || || |||||||||| ||| ||||||||||| ||||| || ||||| |||||| |||||||    
T  22129126 tgtaattaggacgaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagtgacgaaaattcaaatagcctata 22129035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 30890327 - 30890243
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatg 159  Q
    |||||||||||| | |||||||||||||| || |||||  |||||||| | | ||||||||| ||||| |||||||| |||||||    
T  30890327 tgtaattaggaccatttttcaaatgattaatatttacaatggcaaaatagaaagattagtaacttcagagatgaaaattcaaatg 30890243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 10998155 - 10998234
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| ||||||| |||||| |||||    
T  10998155 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgca 10998234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 11312995 - 11312929
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||||||| ||||| ||||||| |||||| ||||||||||||||  | |||||||||    
T  11312995 gattagtaacttcagggacgaaaattcaaatgacctatatttgcaaggatgaaagacttatttaagc 11312929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 21300393 - 21300327
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||||||||||||| ||||||| |||||| ||||| ||||||||  | |||||||||    
T  21300393 gattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaagacctatttaagc 21300327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 53037151 - 53037217
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||||||| ||||| ||||||| |||||| ||||||||||||||  | |||||||||    
T  53037151 gattagtaacttcagggacgaaaattcaaatgacctatatttgcaaggatgaaagacctatttaagc 53037217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 55036769 - 55036683
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||| || || |||||||| | ||| ||||||||||| |||||| ||||||| ||||||| |||||| ||||| ||| ||||    
T  55036769 aaatgattaatatttgcaggggcagattggaaggattagtaacttcaggaatgaaaattcaaatgacctatatttgcagggacgaaa 55036683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 1741489 - 1741388
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || || ||||| | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| ||| ||||  | |||||||    
T  1741489 tcaaatgattaatatttgcaagggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaa 1741390  T
Q  193 gc 194  Q
    ||    
T  1741389 gc 1741388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 21255795 - 21255892
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    |||||||||||| | |||||||||||||| || |||||  |||||||||| || |||||||| || | ||| ||||| |||||||  ||||| |||||    
T  21255795 tgtaattaggaccatttttcaaatgattaatatttacaatggcaaaatggaagcattagtaactttatggacgaaaattcaaatgatctatatttgca 21255892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 46670519 - 46670610
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    |||||||| ||| | |||| ||||||||| || || ||  | |||||||| || |||||||| |||||||||||||| ||||||| ||||||    
T  46670519 tgtaattatgaccattttttaaatgattaatatttgcaatgacaaaatggaagaattagtaacttcagggatgaaaattcaaatgacctata 46670610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 40256994 - 40256888
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || || ||||| | ||| ||||||||||| |||||||| ||||| ||||||  |||||| ||||| |    
T  40256994 tgtaattaggaccaaaagtcaaatgattaatatttgcaagggcatattggaaggattagtaacttcagggacgaaaattcaaataacctatatttgcatg 40256895  T
Q  175 gatgaaa 181  Q
    || ||||    
T  40256894 gacgaaa 40256888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 53037129 - 53037028
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    |||||||| || || || |||||| | | ||| ||||||||||| |||||||| ||||| ||||||| |||||| || || ||||||||  | |||||||    
T  53037129 tcaaatgactaatatttgcaggggtatattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttacagggatgaaagacttatttaa 53037030  T
Q  193 gc 194  Q
    ||    
T  53037029 gc 53037028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 28310612 - 28310708
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgc 171  Q
    |||||||||||| | |||||||||||||| || || ||  |||||||||| | ||||||||| || ||||  ||| | ||||||| |||||| ||||    
T  28310612 tgtaattaggaccatttttcaaatgattaatatttgcaatggcaaaatggaaagattagtaactttagggtcgaagattcaaatgacctatatttgc 28310708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 55036951 - 55037039
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||| | | ||||| ||||||| |||||| ||||| ||| ||||    
T  55036951 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcaagaacgaaaattcaaatgacctatatttgcagggacgaaa 55037039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 49)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 33497522 - 33497715
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33497522 ctgctgacgtgtcctgacaaaactccattcacaaaatgccacgtatctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 33497621  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| || |||||||| || |||||||||    
T  33497622 ttagtaattgcaggggcaaaatgggaggattagtaagctcatggatgaaaaatcaaatgccctataattacagggatgaaaagcatatttaagc 33497715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 33497210 - 33497042
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33497210 ctgctgacgtgtcctgacaaaactccattcaccaaatgtcacgtatctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 33497111  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataatt 169  Q
    ||||||||| || ||||||||||| |||||||||||||||| | ||||||||||||||| |||||||||    
T  33497110 ttagtaattgcaagggcaaaatggaaggattagtaagttcaagaatgaaaaatcaaatgacctataatt 33497042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 38599149 - 38598965
Alignment:
Q  10 tgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaatt 109  Q
    |||||||||||||  ||| ||||||  |||||| || ||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| || ||    
T  38599149 tgtcctgacaaaaacccagtcaccatttgccacttatctaattaccatccacctcagcatatttttttaattaggacgaattttcaaatgattaatattt 38599050  T
Q  110 acaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  38599049 gcaggggcaaaatgagaggattagtaagttcagggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagc 38598965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 34665882 - 34665771
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     
T  34665882 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 34665783  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  34665782 gcatatttaagc 34665771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 1231646 - 1231526
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    ||||||||||||||||||||||||||||| |  ||||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||||| | |    
T  1231646 tgtaattaggacgaattttcaaatgattaatttttacaggggtaaaatgggaggattagtaagctcatggatgaaaaatcaaagggcctataattgtagg 1231547  T
Q  175 gatgaaatgcgtatttaagct 195  Q
    |||||||||| ||||||||||    
T  1231546 gatgaaatgcatatttaagct 1231526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 194
Target Start/End: Original strand, 7393088 - 7393244
Alignment:
Q  38 gccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaag 137  Q
    |||||||  ||||| || |||||||||||||||   |||| |||||||| || ||||||||||||| || || |||||  ||||||||||||||||||||    
T  7393088 gccacgttgctaatcactctccacctcagcaaacaattgtgattaggactaaatttcaaatgattaatatttgcagggataaaatgggaggattagtaag 7393187  T
Q  138 ttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||  |||||||||    
T  7393188 ttcagggatgaaaaatcaaatgacctataattgcagggatgaaatgtctatttaagc 7393244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 34214516 - 34214628
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcaggga-tgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| || ||||||||    
T  34214516 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggattgaaaaatcaaacggcctataattacagggatgaaa 34214615  T
Q  182 tgcgtatttaagc 194  Q
     || |||||||||    
T  34214616 agcatatttaagc 34214628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 25288074 - 25288187
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||| |||||||    
T  25288074 tcaaatgattaatatttgcaggggcaaaatgagaggattagtaagttcagggatgaaaaatcaaatgacctataattgcagtgatgaaatgcatatttaa 25288173  T
Q  193 g-ctaaaataaaat 205  Q
    | ||||||||||||    
T  25288174 gcctaaaataaaat 25288187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 34213876 - 34213765
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||    ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||     
T  34213876 ggacgaactttcaaatgattaacttttacaggggcaaaataggaggattagtaagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaa 34213777  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  34213776 gcatatttaagc 34213765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 34666529 - 34666614
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataatt 169  Q
    ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  34666529 ggacgaactttcaaatgattagtaattacaggg-caaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataatt 34666614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 1232788 - 1232896
Alignment:
Q  84 gacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatg 183  Q
    |||||||||||||||||||| |  |||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||| || ||||||||||    
T  1232788 gacgaattttcaaatgattaatttttacaggggcaaaatgggaggatac--aagctcagggatgaaaaatcaaatggcctataattacagggatgaaatg 1232885  T
Q  184 cgtatttaagc 194  Q
    | |||||||||    
T  1232886 catatttaagc 1232896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 190
Target Start/End: Complemental strand, 24377305 - 24377186
Alignment:
Q  71 tttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattg 170  Q
    ||||| ||||||||||||||||| ||||| ||| || || |||||| |||||||||||||||||||||||||||||||||  ||||||| ||  ||||||    
T  24377305 tttttttaattaggacgaattttgaaatgcttaatatttgcaggggaaaaatgggaggattagtaagttcagggatgaaacttcaaatgacccctaattg 24377206  T
Q  171 caaggatgaaatgcgtattt 190  Q
    |||| ||||||||| |||||    
T  24377205 caagaatgaaatgcatattt 24377186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 37 - 184
Target Start/End: Original strand, 24378939 - 24379085
Alignment:
Q  37 tgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaa 136  Q
    ||||||||| ||||||  | ||||||||| ||| ||||| ||||||||||||||||| ||||| ||  || || |||||||||||| |||||||||||||    
T  24378939 tgccacgtatctaattttcatccacctcaacaatttttt-taattaggacgaattttaaaatgctttttatttgcaggggcaaaataggaggattagtaa 24379037  T
Q  137 gttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgc 184  Q
    ||||| |||||||| |||||||| ||  |||||||| |||||||||||    
T  24379038 gttcaaggatgaaatatcaaatgacccctaattgcagggatgaaatgc 24379085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 27437503 - 27437618
Alignment:
Q  79 attaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatg 178  Q
    |||||||| || ||||||||||||||||||| ||| |||||||||  | ||||||||| |||||||| ||||| ||||| |||||||| ||||| |||||    
T  27437503 attaggactaaatttcaaatgattagtaattgcagtggcaaaatgaaaagattagtaacttcagggacgaaaattcaaacggcctatatttgcagggatg 27437602  T
Q  179 aaatgcgtatttaagc 194  Q
    |||||| |||||||||    
T  27437603 aaatgcatatttaagc 27437618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 29574890 - 29574747
Alignment:
Q  47 ctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggat 146  Q
    ||||||||||||||||||||||||    ||| |||||||| || |||||| ||||||  |||| |||||  ||||||| |||||||||||||| ||||||    
T  29574890 ctaattaccctccacctcagcaaaaaaatgtgattaggaccaaatttcaagtgattaacaattgcagggaaaaaatggaaggattagtaagtttagggat 29574791  T
Q  147 gaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||  ||||||| |||||| ||||| ||||||||||| |||||    
T  29574790 gaaatttcaaatgacctatatttgcagggatgaaatgcatattt 29574747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 4970244 - 4970130
Alignment:
Q  76 gtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagg 175  Q
    ||||||||||| || ||||||||| ||| || || |||||||||||||| |||||||||||||||||||||||||  ||||||| ||  |||||||| ||    
T  4970244 gtaattaggactaaatttcaaatgcttaatatttgcaggggcaaaatggaaggattagtaagttcagggatgaaatttcaaatgacccctaattgcaggg 4970145  T
Q  176 atgaaatgcgtattt 190  Q
    ||||||||| |||||    
T  4970144 atgaaatgcatattt 4970130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 4463408 - 4463525
Alignment:
Q  77 taattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagga 176  Q
    |||||||||| || |||||| ||||||  |||| |||||  | ||| |||||||||||||||||||||||||||  |||||||||||||| ||||| |||    
T  4463408 taattaggaccaaatttcaagtgattaacaattgcagggaaagaataggaggattagtaagttcagggatgaaatttcaaatggcctatacttgcaggga 4463507  T
Q  177 tgaaatgcgtatttaagc 194  Q
    |||||||| |||||||||    
T  4463508 tgaaatgcatatttaagc 4463525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 27436681 - 27436564
Alignment:
Q  77 taattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagga 176  Q
    |||||||||| || ||||||||||||||||||| ||| |||||||||  | ||||||||| |||||||| ||||| ||||| | |||||| ||||| |||    
T  27436681 taattaggactaaatttcaaatgattagtaattgcagtggcaaaatgaaaagattagtaacttcagggacgaaaattcaaacgacctatatttgcaggga 27436582  T
Q  177 tgaaatgcgtatttaagc 194  Q
    |||||||| |||||||||    
T  27436581 tgaaatgcatatttaagc 27436564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 7392345 - 7392250
Alignment:
Q  58 ccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaat 153  Q
    |||||||||||||   | || |||||||| || ||||||||||||| || || |||||  ||||||||||||||||||||||||||||||||||||    
T  7392345 ccacctcagcaaacaatcgtgattaggactaaatttcaaatgattaatatttgcagggataaaatgggaggattagtaagttcagggatgaaaaat 7392250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 190
Target Start/End: Original strand, 29575848 - 29575980
Alignment:
Q  58 ccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaa 157  Q
    |||||||||||||    |||||||||||| || |||||| ||||||  |||| || ||  | ||||||||||||||||| || ||||||||||  |||||    
T  29575848 ccacctcagcaaaaaaatgtaattaggaccaaatttcaagtgattaacaattgcatggaaagaatgggaggattagtaaatttagggatgaaatttcaaa 29575947  T
Q  158 tggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||| ||||| ||||| ||||||||||| |||||    
T  29575948 tggactatatttgcagggatgaaatgcatattt 29575980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 40422424 - 40422543
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| || || ||| |||| | | | ||||||||||| |||||||| ||||| ||||||| |||||| ||||| |    
T  40422424 tgtaattaggaccatttttcaaatgattaatatttgcagtggcagatttgaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagg 40422523  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    |||||||  | |||||||||    
T  40422524 gatgaaagacctatttaagc 40422543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 36623617 - 36623736
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| || |||||||| |||||||| ||||| |||||||||||||| ||||| |    
T  36623617 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaatggcctatatttgcagg 36623716  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  36623717 gacgaaagacatatttaagc 36623736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 43866831 - 43866712
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| || |||||||| |||||||| ||||| |||||||||||||| ||||| |    
T  43866831 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaatggcctatatttgcagg 43866732  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  43866731 gacgaaagacatatttaagc 43866712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 9632433 - 9632347
Alignment:
Q  90 ttttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagga 176  Q
    |||||||||||||| || || ||  | |||||||| ||||||||||| |||||||| ||||| ||||||| |||||| |||||||||    
T  9632433 ttttcaaatgattaatatttgcaatgacaaaatggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcaagga 9632347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 7675 - 7776
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||| ||| ||||| |||||||||||||| ||||| ||| ||||  | |||||||    
T  7675 tcaaatgattaatatttgcaggggcatattggaaggattagtaacttcatggacgaaaattcaaatggcctatatttgcagggacgaaagacctatttaa 7774  T
Q  193 gc 194  Q
    ||    
T  7775 gc 7776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 4462271 - 4462179
Alignment:
Q  49 aattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttca 141  Q
    ||||||||||||||||||||||    ||| |||||||| || |||||| ||||||  |||| |||||  | ||||||||||||||||||||||    
T  4462271 aattaccctccacctcagcaaaaaaatgtgattaggaccaaatttcaagtgattaacaattgcagggaaagaatgggaggattagtaagttca 4462179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 36574890 - 36574822
Alignment:
Q  122 tgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||  ||||  |||||||||| |||||    
T  36574890 tgggaggattagtaagttcagggatgaaatttcaaatgccctatatatgcagagatgaaatgcatattt 36574822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 23424794 - 23424873
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    ||||||||||| || || |||||||| | ||| | ||||||||| |||||||| ||||| |||||||||||||| |||||    
T  23424794 tcaaatgattaatatttgcaggggcagattggaatgattagtaacttcagggacgaaaattcaaatggcctatatttgca 23424873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 25287912 - 25287825
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcc 162  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| ||||||||||    
T  25287912 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggcc 25287825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 29190423 - 29190529
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| ||||| ||| |||| |||||||| ||||| ||||| |    
T  29190423 tgtaattaggactaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagagataaaaattcaaatggtctatatttgcagg 29190522  T
Q  175 gatgaaa 181  Q
    || ||||    
T  29190523 gacgaaa 29190529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 37343042 - 37342976
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||||||||||||| ||||||| |||||| ||||| ||||||||  | |||||||||    
T  37343042 gattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaagacctatttaagc 37342976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 43866835 - 43866901
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||||||||||||| ||||||| |||||| ||||| ||||||||  | |||||||||    
T  43866835 gattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaagacttatttaagc 43866901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 36623454 - 36623353
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||| ||| | ||  ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||||  | |||||||    
T  36623454 tcaaatgattaatatttgcaggagcagattgaaaggattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaaaacatatttaa 36623355  T
Q  193 gc 194  Q
    ||    
T  36623354 gc 36623353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 36623613 - 36623560
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||| |||||||||||||| ||||||| |||||| ||||| ||||||||    
T  36623613 gattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaa 36623560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 37343046 - 37343143
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| || |||||||| |||||||| ||||| ||||||| |||||| |||||    
T  37343046 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaatgacctatatttgca 37343143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 39030485 - 39030452
Alignment:
Q  196 aaaataaaataaaaatacatcacaatttgttttc 229  Q
    ||||||||||||||||||||||||||||||||||    
T  39030485 aaaataaaataaaaatacatcacaatttgttttc 39030452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 27857024 - 27857112
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| || || || ||||| | ||| | ||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||||    
T  27857024 tcaaatgattaatatttgcaagggcagattggaatgattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaa 27857112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 38600265 - 38600333
Alignment:
Q  126 aggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||||| |||||||| ||||  ||||||| |||||| ||||| ||| ||||||| |||||||||    
T  38600265 aggattagtaacttcagggacgaaatttcaaatgacctatatttgcagggacgaaatgcctatttaagc 38600333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 41801918 - 41801830
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||| | ||||| ||||||| |||||| ||||| ||| ||||    
T  41801918 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcaggaacgaaaattcaaatgacctatatttgcagggacgaaa 41801830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 547530 - 547432
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| || || |||||||| | ||| ||||||||||| ||||||||  |||| | |||||||||||| ||||| ||| |||| || |||||||||    
T  547530 aaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacaaaaatttaaatggcctatatttgcagggacgaaa-gcatatttaagc 547432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 20096339 - 20096394
Alignment:
Q  126 aggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||||    
T  20096339 aggattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaa 20096394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 210
Target Start/End: Complemental strand, 31690015 - 31689880
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | ||||||||||||||  | || ||| |||| | ||| |||||| |||| |||| ||| ||||| |||||||| ||||| ||||| |    
T  31690015 tgtaattaggacaatttttcaaatgattaacatttgcagtggcatattggaaggattggtaacttcatggacgaaaattcaaatggtctatatttgcagg 31689916  T
Q  175 gatgaaatgcgtatttaagctaaaataaaataaaaa 210  Q
    ||  |||  | |||||||||  ||||| ||||||||    
T  31689915 gacaaaagacctatttaagcctaaatataataaaaa 31689880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 36576029 - 36576088
Alignment:
Q  123 gggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||||| ||||||||||||||||||  ||||||||| |||| || || |||||||||    
T  36576029 gggaggattggtaagttcagggatgaaatttcaaatggcttatatttacagggatgaaat 36576088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 547695 - 547629
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||| ||| ||||| ||||||| |||||||||||| ||||||||  | |||||||||    
T  547695 gattagtaacttcaaggacgaaaattcaaatgacctataattgcagggatgaaagacctatttaagc 547629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 20096140 - 20096034
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || ||| |||||| ||| ||||||||||| ||||||||  |||| ||||||| | |||| ||||| |    
T  20096140 tgtaattaggaccaaaagtcaaatgattaatatttgcagaggcaaattggaaggattagtaacttcagggacaaaaattcaaatgacatatatttgcagg 20096041  T
Q  175 gatgaaa 181  Q
    || ||||    
T  20096040 gacgaaa 20096034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 43866993 - 43867099
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||  ||||||||||| |||| ||| ||||| |||||||| ||||| ||||| ||| ||||  | |||||||    
T  43866993 tcaaatgattaatatttgcaggggcagattgaaaggattagtaacttcatggacgaaaattcaaatggtctatatttgcagggacgaaaaacatatttaa 43867092  T
Q  193 gctaaaa 199  Q
    || ||||    
T  43867093 gccaaaa 43867099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 11478247 - 11478146
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||  ||||||||||| |||| ||| ||||| ||||||| |||||| ||||| ||| ||||  | |||||||    
T  11478247 tcaaatgattaatatttgcaggggcagattgaaaggattagtaacttcaaggacgaaaattcaaatgacctatatttgcagggacgaaaaacctatttaa 11478148  T
Q  193 gc 194  Q
    ||    
T  11478147 gc 11478146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 11478427 - 11478500
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||  |||||||| |||||    
T  11478427 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaagttcaaatggtctata 11478500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 40525627 - 40525530
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    |||||||||||| ||   ||||||||||| || || ||| |||| | ||| ||||||||||| |||||||| ||||| ||||||| | |||| |||||    
T  40525627 tgtaattaggaccaaaagtcaaatgattaatatttgcagtggcagattggaaggattagtaacttcagggacgaaaattcaaatgacatatatttgca 40525530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 73303 - 73110
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  73303 ctgctgatgtgtcctgacaaaatcccattcaccaagtgccacgtagctaattaccctccacctcagcaaatttttgtaattaggacaaattttcaaatga 73204  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| || |||||||| || |||||||||    
T  73203 ttagtaattacaggggcaaaatgggaggattagtaagctcagggatgaaaagtcaaatggcccataattacagggatgaaaagcatatttaagc 73110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 55012995 - 55013187
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  55012995 ctgctgatgtgtcttgacaaaactccattcatcaaatgccacgtacctaattaccctccacctcggcaaatttttgtaattaggacgaattttcaaatga 55013094  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||| || |||||||| || |||||||||    
T  55013095 ttagtaattacaggggcaaactgggaggattagtaagctca-ggatgaaaaatcaaatagcctataattacatggatgaaaagcatatttaagc 55013187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 38814315 - 38814426
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |||||||||||     
T  38814315 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctaaaattacaaggatgaaaa 38814414  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  38814415 gcatatttaagc 38814426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 38982584 - 38982691
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||     
T  38982584 ggacgaactttcaaatgattagtaattacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaa 38982683  T
Q  183 gcgtattt 190  Q
    || |||||    
T  38982684 gcatattt 38982691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 38813666 - 38813555
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     
T  38813666 ggacgaactttcaaattattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 38813567  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  38813566 gcatatttaagc 38813555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 56556694 - 56556583
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||     
T  56556694 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataattacagggatgaaaa 56556595  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  56556594 gcatatttaagc 56556583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 56557313 - 56557436
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||  | ||||||||     
T  56557313 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcatggatgaaaaatcaaacggcctataattagagggatgaaaa 56557412  T
Q  183 gcgtatttaagctaaaataaaata 206  Q
    || |||||||||| ||| ||||||    
T  56557413 gcatatttaagcttaaaaaaaata 56557436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 52816411 - 52816522
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||     
T  52816411 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagagatgaaaaatcaaacggcctataattacagggatgaaaa 52816510  T
Q  183 gcgtatttaagc 194  Q
     | |||||||||    
T  52816511 tcatatttaagc 52816522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 52815775 - 52815664
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||| ||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||     
T  52815775 ggacgaactttcaagtgattagtaattacaggggcaaaatgaaaggattagtaagttcagggataaaaaatcaaacggcctataattacagggatgaaaa 52815676  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  52815675 gcatatttaagc 52815664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 91 - 194
Target Start/End: Original strand, 53477076 - 53477179
Alignment:
Q  91 tttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  |||||||||| |||||    
T  53477076 tttcaaatgattaatatttgcaggggcaaaatgggaggattagtaagttcagagatgaaaaatcaaatgacctataattgcagagatgaaatgcatattt 53477175  T
Q  191 aagc 194  Q
    ||||    
T  53477176 aagc 53477179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 192
Target Start/End: Complemental strand, 54590281 - 54590146
Alignment:
Q  57 tccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaa 156  Q
    ||||||| ||||||||||| |||||||||||||  |||||||||||| || ||  || |||||||||| || |||||||||||||  |||||||||||||    
T  54590281 tccacctaagcaaatttttttaattaggacgaaaattcaaatgattaatatttgtagaggcaaaatggaagaattagtaagttcaaagatgaaaaatcaa 54590182  T
Q  157 atggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||| |||||||||||| ||||||||||| |||||||    
T  54590181 atgacctataattgcagggatgaaatgcatatttaa 54590146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 54591560 - 54591682
Alignment:
Q  79 attaggacgaattttcaaatgattagtaatta--caggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagga 176  Q
    |||||||||||  |||||||||||| || ||   |||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||| |||    
T  54591560 attaggacgaaaattcaaatgattaatatttttgcaggggcaaaatgggaggtttagtaagttcagggatgaaaaatcaaatgatctataattgcaggga 54591659  T
Q  177 tgaaatgcgtatttaagctaaaa 199  Q
    |||||||| ||||||||| ||||    
T  54591660 tgaaatgcatatttaagccaaaa 54591682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 23455041 - 23454955
Alignment:
Q  108 ttacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  23455041 ttacaggggcaaaatgggatgattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagc 23454955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 23455677 - 23455788
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||| ||||||||| |  |||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| || |||||||||    
T  23455677 ggacgaaatttgaaatgattaatttttacagtggcaaaatgggaggattagtaagctcaggaatgaaaaatcaaatgacctataattacagggatgaaat 23455776  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  23455777 gcatatttaagc 23455788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 13336820 - 13336937
Alignment:
Q  77 taattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagga 176  Q
    |||| ||||| || |||||| ||||||  |||| |||||  | |||||||||||||||||||||||||||||||  ||||||| |||||| ||||| |||    
T  13336820 taataaggaccaaatttcaagtgattaacaattgcagggaaagaatgggaggattagtaagttcagggatgaaatttcaaatgacctatatttgcaggga 13336919  T
Q  177 tgaaatgcgtatttaagc 194  Q
    |||||||| |||||||||    
T  13336920 tgaaatgcatatttaagc 13336937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 22882279 - 22882422
Alignment:
Q  47 ctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggat 146  Q
    ||||||||||||||||||||||||    ||| |||| ||| || ||| || ||||||  |||| |||||  | ||||||||||||| |||||||||||||    
T  22882279 ctaattaccctccacctcagcaaaaaaatgtgattatgaccaaatttgaagtgattaacaattgcagggaaagaatgggaggattattaagttcagggat 22882378  T
Q  147 gaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||  ||||||| |||||| ||||| ||||||||||| |||||    
T  22882379 gaaatttcaaatgacctatatttgcagggatgaaatgcatattt 22882422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 22933943 - 22934086
Alignment:
Q  47 ctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggat 146  Q
    ||||||||||||||||||||||||    ||| |||| ||| || ||| || ||||||  |||| |||||  | ||||||||||||| |||||||||||||    
T  22933943 ctaattaccctccacctcagcaaaaaaatgtgattatgaccaaatttgaagtgattaacaattgcagggaaagaatgggaggattattaagttcagggat 22934042  T
Q  147 gaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||  ||||||| |||||| ||||| ||||||||||| |||||    
T  22934043 gaaatttcaaatgacctatatttgcagggatgaaatgcatattt 22934086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 9254522 - 9254411
Alignment:
Q  79 attaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatg 178  Q
    |||||||| || |||||| ||||||  |||| |||||  | |||  ||||||||||||||||| ||||||||  |||||||||||||| ||||| |||||    
T  9254522 attaggaccaaatttcaagtgattaacaattgcagggaaataataagaggattagtaagttcaaggatgaaatttcaaatggcctatatttgcagggatg 9254423  T
Q  179 aaatgcgtattt 190  Q
    |||||| |||||    
T  9254422 aaatgcatattt 9254411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 32846482 - 32846362
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||| ||| | |||||||||||||| || || ||  |||||||||| ||||||| ||| |||||| | ||||| |||||||||||||| |||||||    
T  32846482 tgtaattaagaccatttttcaaatgattaatatttgcaatggcaaaatggaaggattaataacttcaggaacgaaaattcaaatggcctatatttgcaag 32846383  T
Q  175 gatgaaatgcgtatttaagct 195  Q
     | ||||  | ||||||||||    
T  32846382 cacgaaagacctatttaagct 32846362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 47862272 - 47862148
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   |||||||||||||| || |||||||| | ||| ||||||||||| ||||| || ||||| ||||||| | |||| ||||| |    
T  47862272 tgtaattaggacaaaaagtcaaatgattagtatttgcaggggcagattggaaggattagtaacttcagagacgaaaattcaaatgacatatatttgcagg 47862173  T
Q  175 gatgaaatgcgtatttaagctaaaa 199  Q
    |||||||  | ||||||||| ||||    
T  47862172 gatgaaagacctatttaagccaaaa 47862148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 8287052 - 8286933
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| || || ||  |||||||||| ||||||| ||| ||||| || ||||| ||||||||| |||| ||||| |    
T  8287052 tgtaattaggaccatttttcaaatgattaatatttgcaatggcaaaatggaaggattattaacttcagagacgaaaattcaaatggcttatatttgcagg 8286953  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  8286952 gacgaaagacctatttaagc 8286933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 22249997 - 22250116
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| || |||||||| |||||||| ||||| |||||||||||||| ||||| |    
T  22249997 tgtaattaggactaaaagtcaaatgattaatatttgcaggggcatattggaagaattagtaatttcagggacgaaaattcaaatggcctatatttgcagg 22250096  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  22250097 gacgaaagacatatttaagc 22250116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 12691526 - 12691396
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || ||  |||| || | ||| ||||||||||| |||||||| ||||| |||||||||||||| ||||| |    
T  12691526 tgtaattaggaccaaaagtcaaatgattaatatttgtagggacagattggaaggattagtaacttcagggacgaaaattcaaatggcctatatttgcatg 12691427  T
Q  175 gatgaaatgcgtatttaagctaaaataaaat 205  Q
    || ||||  | ||||||||| | ||||||||    
T  12691426 gacgaaagacctatttaagccataataaaat 12691396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 35730925 - 35731031
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| || || ||  | || ||||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| |    
T  35730925 tgtaattaggactatttttcaaatgattaatatttgcaatgacataatggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagg 35731024  T
Q  175 gatgaaa 181  Q
    || ||||    
T  35731025 gacgaaa 35731031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 53559669 - 53559770
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||| | ||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||||  | |||||||    
T  53559669 tcaaatgattaatatttgcaggggcagattggaacgattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaa 53559768  T
Q  193 gc 194  Q
    ||    
T  53559769 gc 53559770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 54961533 - 54961432
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| |||||||| ||||| ||||| ||| ||||  | |||||||    
T  54961533 tcaaatgattaatatttgcaggggcatattggaaggattagtaacttcagggacgaaaattcaaatggtctatatttgcagggacgaaagacctatttaa 54961434  T
Q  193 gc 194  Q
    ||    
T  54961433 gc 54961432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 22881304 - 22881172
Alignment:
Q  58 ccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaa 157  Q
    |||||||||||||    |||||||||||| || |||||| ||||||  ||||  |||   | ||||||||||||||||| | ||| |||||||  |||||    
T  22881304 ccacctcagcaaaaaaatgtaattaggaccaaatttcaagtgattaacaattgtaggaaaagaatgggaggattagtaaatgcagagatgaaatttcaaa 22881205  T
Q  158 tggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||||||| || || ||||||||||| |||||    
T  22881204 tggcctatatttacagggatgaaatgcatattt 22881172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 22932968 - 22932836
Alignment:
Q  58 ccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaa 157  Q
    |||||||||||||    |||||||||||| || |||||| ||||||  ||||  |||   | ||||||||||||||||| | ||| |||||||  |||||    
T  22932968 ccacctcagcaaaaaaatgtaattaggaccaaatttcaagtgattaacaattgtaggaaaagaatgggaggattagtaaatgcagagatgaaatttcaaa 22932869  T
Q  158 tggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||||||| || || ||||||||||| |||||    
T  22932868 tggcctatatttacagggatgaaatgcatattt 22932836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 37678112 - 37678231
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    ||||||||| || | |||||||||||||| || || ||| |||| | ||| ||||||||||| |||||||| ||||| | ||||||| |||| ||||| |    
T  37678112 tgtaattagaaccatttttcaaatgattaatatttgcagtggcagattggaaggattagtaacttcagggacgaaaatttaaatggcttatatttgcagg 37678211  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  37678212 gacgaaagacctatttaagc 37678231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 22249993 - 22249927
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||||||||||||| ||||||| |||||| ||||| ||||||||  | |||||||||    
T  22249993 gattagtaacttcagggatgaaaattcaaatgacctatatttgcagggatgaaagacttatttaagc 22249927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 20086539 - 20086466
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| ||||||| ||||||    
T  20086539 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctata 20086466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 33294425 - 33294526
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| |  || ||||||||||| |||||||| ||||| |||||| ||||||| ||||| ||| ||||  | |||||||    
T  33294425 tcaaatgattaatatttgcaggggcagatcggaaggattagtaacttcagggacgaaaattcaaattgcctatatttgcagggaggaaagacatatttaa 33294524  T
Q  193 gc 194  Q
    ||    
T  33294525 gc 33294526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 47862434 - 47862507
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    ||||||||||| || || |||||||||| | | ||||||||||| |||| ||| ||||| ||||||||||||||    
T  47862434 tcaaatgattaatatttgcaggggcaaattagaaggattagtaacttcatggacgaaaattcaaatggcctata 47862507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 53475933 - 53475832
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || || ||||||  ||  ||||||||||| || ||||||||||| |||||||| ||||| |||||| |||||||  | |||||||    
T  53475933 tcaaatgattaatatttgcaagggcaatttgaaaggattagtaactttagggatgaaaactcaaatggtctatatttgcaaagatgaaagacatatttaa 53475834  T
Q  193 gc 194  Q
    ||    
T  53475833 gc 53475832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 8287248 - 8287316
Alignment:
Q  126 aggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||||  | |||||||||    
T  8287248 aggattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacctatttaagc 8287316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 10128810 - 10128763
Alignment:
Q  91 tttcaaatgattagtaattacaggggcaaaatgggaggattagtaagt 138  Q
    ||||||||||||| |||||  || ||||||||||||||||||||||||    
T  10128810 tttcaaatgattaataattgtagtggcaaaatgggaggattagtaagt 10128763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 13872333 - 13872468
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| || |||||||| ||||||||  |||| |||||| | ||||| ||||| |    
T  13872333 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaagaattagtaacttcagggacaaaaattcaaatagactatatttgcagg 13872432  T
Q  175 gatgaaatgcgtatttaagctaaaataaaataaaaa 210  Q
    || ||||  | ||||||||| |||| || |||||||    
T  13872433 gacgaaagacatatttaagccaaaaaaatataaaaa 13872468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 50246137 - 50246228
Alignment:
Q  90 ttttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    |||||||||||||| || || ||| | || | ||| ||||||||||| |||| ||| ||||| ||||||| |||||| ||||| ||||||||    
T  50246137 ttttcaaatgattaatatttgcagtgacagattggaaggattagtaacttcatggacgaaaattcaaatgacctatatttgcagggatgaaa 50246228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 27813169 - 27813072
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    ||||||||| || | ||||||||||||||||| || ||  | |||||||| ||||| ||||| |||| |||| |||| ||||||| | |||| |||||    
T  27813169 tgtaattagaaccatttttcaaatgattagtatttgcaatgacaaaatggaaggatcagtaacttcatggataaaaattcaaatgacttatatttgca 27813072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 47981918 - 47982019
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| ||||| || ||||| |||||| | ||||| ||||| ||| ||||  | |||||||    
T  47981918 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagagacgaaaattcaaatagtctatatttgcagggacgaaagacatatttaa 47982017  T
Q  193 gc 194  Q
    ||    
T  47982018 gc 47982019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 489463 - 489539
Alignment:
Q  90 ttttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    |||||||||||||| || || ||  |||||||||| ||||||||||| ||| |||| |||||  |||| ||||||||    
T  489463 ttttcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttctgggacgaaaatccaaacggcctata 489539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 515255 - 515331
Alignment:
Q  90 ttttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    |||||||||||||| || || ||  |||||||||| ||||||||||| ||| |||| |||||  |||| ||||||||    
T  515255 ttttcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttctgggacgaaaatccaaacggcctata 515331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 12691687 - 12691775
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| || || |||||||  | ||| ||||||||||| ||||||||  |||| ||||||| |||||| ||||| ||| ||||    
T  12691687 tcaaatgattaatatttgcaggggcggattggaaggattagtaacttcagggacaaaaattcaaatgacctatatttgcagggacgaaa 12691775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 19740929 - 19740861
Alignment:
Q  126 aggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||||| |||||||| ||||| ||||||| | |||| ||||||||| ||||  | |||||||||    
T  19740929 aggattagtaacttcagggacgaaaattcaaatgacatatatttgcaaggacgaaagacctatttaagc 19740861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 34238572 - 34238484
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| || || |||||||| | ||  ||||||||||| ||||| || ||||| |||||| ||||||| || |||||| ||||    
T  34238572 tcaaatgattaatatttgcaggggcatattgaaaggattagtaacttcagagacgaaaattcaaatagcctatatttacaaggacgaaa 34238484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 37677917 - 37677849
Alignment:
Q  126 aggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||||| |||||||| ||||| ||||||| |||||| ||||| ||| ||||  | |||||||||    
T  37677917 aggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggaagaaagacctatttaagc 37677849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 54961713 - 54961801
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| || |||| |||||| | ||  ||||||||||| ||||||||  |||| ||||||| |||||| ||||| ||| ||||    
T  54961713 tcaaatgattaatatttacgggggcagattgaaaggattagtaacttcagggactaaaattcaaatgacctatatttgcagggacgaaa 54961801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 32619578 - 32619389
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    |||||||||||||||| |||||| ||| ||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  32619578 ctgctgatgtgtcctgccaaaaccccagtcaccaagtgccacgtagctaatcaccctccacctcagcaaaattttgtaattaggacgaattttcaaatga 32619479  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||||||| || |||||    
T  32619478 ttagtaattacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaaagcatattt 32619389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 32622262 - 32622442
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    |||||||||||||||| |||||| ||| ||||||| ||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||| |    
T  32622262 ctgctgatgtgtcctgccaaaaccccagtcaccaagtgccacgtagctaatcaccctccacctcagcaaaattttgtaattatgacgaattttcaaatta 32622361  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || ||||||||    
T  32622362 ttagtaattacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaa 32622442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 51935107 - 51935303
Alignment:
Q  3 gctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgatt 102  Q
    ||||| ||||||||| ||||  ||||||| || |||||| ||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  51935107 gctgacgtgtcctgataaaaaaccattcatcatatgccatgtatctaattaccctccacctcagcatttttttttaattaggacgaattttcaaatgatt 51935206  T
Q  103 agtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagctaaaa 199  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||| || |||||||| || ||||||||| ||||    
T  51935207 agtaattgcaggggcaaaatgggaggattagaaagctcagggatgaaaaatcaaatgacatataattacatggatgaaaagcatatttaagccaaaa 51935303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 46282781 - 46282888
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     
T  46282781 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 46282880  T
Q  183 gcgtattt 190  Q
    || |||||    
T  46282881 gcatattt 46282888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 32238859 - 32238704
Alignment:
Q  37 tgccacgtacctaattaccctccacctcagcaaatttttgt--aattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagt 134  Q
    ||||||||| ||||||||| ||||||||||||  ||||| |  |||||||||||||||| ||||| |||  | |||||| ||||||||||||||||||||    
T  32238859 tgccacgtatctaattaccatccacctcagcagttttttttttaattaggacgaattttgaaatgcttaacatttacagaggcaaaatgggaggattagt 32238760  T
Q  135 aagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||||||||||||||  |||||| ||||||| ||||| ||||||||||| |||||    
T  32238759 aagttcagggatgaaatttcaaatagcctatatttgcagggatgaaatgcatattt 32238704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 46282183 - 46282072
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| || ||||||||     
T  46282183 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacgacctataattacagggatgaaaa 46282084  T
Q  183 gcgtatttaagc 194  Q
     | |||||||||    
T  46282083 acatatttaagc 46282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 49093153 - 49093042
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     
T  49093153 ggacgaactttcaaatgattagtaattacatgggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 49093054  T
Q  183 gcgtatttaagc 194  Q
    || | |||||||    
T  49093053 gcatgtttaagc 49093042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 50062936 - 50063043
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     
T  50062936 ggacgaactttcaaatgattagtaattacagaggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 50063035  T
Q  183 gcgtattt 190  Q
    || |||||    
T  50063036 gcatattt 50063043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 57 - 194
Target Start/End: Complemental strand, 2828331 - 2828194
Alignment:
Q  57 tccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaa 156  Q
    ||||||| ||||||||||| |||||| ||||||  |||||||||||| || || ||| |||||||| | |||||||||||||| | ||||||||||||||    
T  2828331 tccacctaagcaaatttttttaattaagacgaaaattcaaatgattaatatttgcagaggcaaaatagaaggattagtaagtttatggatgaaaaatcaa 2828232  T
Q  157 atggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    |||  ||||||||||||||||||||||| |||||||||    
T  2828231 atgatctataattgcaaggatgaaatgcatatttaagc 2828194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 49093801 - 49093875
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaa 157  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49093801 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaa 49093875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 50062315 - 50062246
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaa 152  Q
    ||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  50062315 ggacgaactttcaaatgattagtaattacaggagcaaaatggaaggattagtaagttcagggatgaaaaa 50062246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 6345618 - 6345732
Alignment:
Q  76 gtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagg 175  Q
    ||||||||||| || ||| ||||| ||| || || |||||||||||||| |||||||||||||||||||||||||  ||||||| ||  |||||||| ||    
T  6345618 gtaattaggactaaattttaaatgcttaatatttgcaggggcaaaatggaaggattagtaagttcagggatgaaatttcaaatgacccctaattgcaggg 6345717  T
Q  176 atgaaatgcgtattt 190  Q
    ||||||||| |||||    
T  6345718 atgaaatgcatattt 6345732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 25065033 - 25064936
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||| |  ||| |||| || |||||||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||| |||||||    
T  25065033 aaatgattaatttttatagggacagaatgggaggattagtaagatcagggatgaaaaatcaaattacctataattgcagggatgaaatgcatatttaa 25064936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 25065958 - 25066055
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||| |  ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||  | ||||||||||| |||||||    
T  25065958 aaatgattaatttttacaggggtaaaatggaaggattagtaagctcagggatgaaaaatcaaatggcttataattatagggatgaaatgcatatttaa 25066055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 13295235 - 13295136
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |  ||||| ||||||||||| |||||||||||| |||||| |||||||||||||| ||||||||| || || |||||||| |||||||||    
T  13295235 aaatgattaatttttacaagggcaaaatggaaggattagtaagctcaggggtgaaaaatcaaatgacctataattacaggggtgaaatgcatatttaagc 13295136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 13295608 - 13295679
Alignment:
Q  123 gggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    |||||| |||||||| |||| |||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  13295608 gggagggttagtaagctcagagatgaaaaatcaaatggcctataattacagggatgaaatgcatatttaagc 13295679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 190
Target Start/End: Complemental strand, 6344373 - 6344260
Alignment:
Q  77 taattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagga 176  Q
    |||||| ||| || ||||||||| ||| || || || |||||||||||||||||||||||||||| ||||||||  ||||||| ||  ||||| || |||    
T  6344373 taattatgaccaaatttcaaatgtttaatatttgcaagggcaaaatgggaggattagtaagttcatggatgaaatttcaaatgacccctaattacaggga 6344274  T
Q  177 tgaaatgcgtattt 190  Q
    |||||||| |||||    
T  6344273 tgaaatgcatattt 6344260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 2829523 - 2829645
Alignment:
Q  79 attaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaa-------atcaaatggcctataattgc 171  Q
    |||| ||||||  |||||||||||| || || |||||| |||||||||||||||||||| ||| |||||||||       |||||||| ||||||||||     
T  2829523 attatgacgaaaattcaaatgattaatatttgcaggggtaaaatgggaggattagtaagctcaaggatgaaaaatcaaatatcaaatgacctataattgt 2829622  T
Q  172 aaggatgaaatgcgtatttaagc 194  Q
    | ||||||||||| |||||||||    
T  2829623 agggatgaaatgcatatttaagc 2829645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 5183770 - 5183894
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||||| ||| |||||| |||| |||||||| ||||| |||||||||||||| ||||| |    
T  5183770 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattcgtaacttcagggacgaaaattcaaatggcctatatttgcagg 5183869  T
Q  175 gatgaaatgcgtatttaagctaaaa 199  Q
    ||  |||  ||||||||||| ||||    
T  5183870 gacaaaagacgtatttaagccaaaa 5183894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 10019637 - 10019728
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    |||||||| ||| | |||||||||||||| || || ||  |||||||||| ||||||||||| |||||||||||||| ||||||| ||||||    
T  10019637 tgtaattatgaccatttttcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttcagggatgaaaattcaaatgacctata 10019728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 24701533 - 24701652
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||| ||| || ||  |  |||||||||| ||||||||||| |||||||| ||||| ||||||||| |||| ||||| |    
T  24701533 tgtaattaggaccatttttcaaatggttaatatttgtaatggcaaaatggaaggattagtaacttcagggacgaaaattcaaatggcttatatttgcagg 24701632  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    |||||||  | |||||||||    
T  24701633 gatgaaagacctatttaagc 24701652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 29980902 - 29981022
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||||| ||| ||||||||||| ||| |||| ||||| ||||||| |||||| ||||||     
T  29980902 tgtaattaggaccaaaaatcaaatgattaatatttgcaggggcaaattggaaggattagtaacttccgggacgaaaattcaaatgacctatatttgcaaa 29981001  T
Q  175 gatgaaatgcgtatttaagct 195  Q
    || ||||  | ||||||||||    
T  29981002 gacgaaagacctatttaagct 29981022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 46544998 - 46545086
Alignment:
Q  78 aattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    ||||||||| | |||||||||||||| || || ||| |||||||||| ||||||||||| |||||||| ||||  ||||||| ||||||    
T  46544998 aattaggactatttttcaaatgattaatatttgcagtggcaaaatggaaggattagtaacttcagggacgaaacttcaaatgacctata 46545086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 1040418 - 1040299
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| ||||||||  |||| ||||||||| |||| |||||||    
T  1040418 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacaaaaattcaaatggcttatatttgcaag 1040319  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  1040318 gacgaaagacatatttaagc 1040299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 1047324 - 1047205
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| ||||||||  |||| ||||||||| |||| |||||||    
T  1047324 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacaaaaattcaaatggcttatatttgcaag 1047225  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  1047224 gacgaaagacatatttaagc 1047205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 2953728 - 2953847
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| |    
T  2953728 tgtaattaggaccaaaaatcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagg 2953827  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  2953828 gacgaaagacatatttaagc 2953847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 29043037 - 29043152
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||  ||||||||||| |||||||| ||||| |||||||||||||| |||||  || ||||  | |||||||    
T  29043037 tcaaatgattaatatttgcaggggcagattgaaaggattagtaacttcagggacgaaaattcaaatggcctatatttgcagagacgaaagacatatttaa 29043136  T
Q  193 gctaaaataaaataaa 208  Q
    || || ||||||||||    
T  29043137 gccaagataaaataaa 29043152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 46849922 - 46850041
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||||| ||| ||||| ||||| |||||||| ||||| ||||||| |||||| ||||| |    
T  46849922 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggatcagtaacttcagggacgaaaattcaaatgacctatatttgcagg 46850021  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  46850022 gacgaaagacctatttaagc 46850041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 29042879 - 29042945
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||||||||||||| ||||||| |||||| ||||||||||||||  | |||||||||    
T  29042879 gattagtaacttcagggatgaaaattcaaatgacctatatttgcaaggatgaaagacctatttaagc 29042945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 19755687 - 19755788
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| ||||||||| |||| ||||||| |||||| ||||| ||| ||||  | |||||||    
T  19755687 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggataaaaattcaaatgacctatatttgcagggacgaaagacctatttaa 19755786  T
Q  193 gc 194  Q
    ||    
T  19755787 gc 19755788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 5926785 - 5926909
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || ||| |||| | |||  |||||||||| |||||||||||||| |||||||| ||||| ||||| |    
T  5926785 tgtaattaggaccaaaagtcaaatgattactatttgcagaggcagattggacggattagtaacttcagggatgaaaattcaaatggtctatatttgcagg 5926884  T
Q  175 gatgaaatgcgtatttaagctaaaa 199  Q
    || ||||  | ||||||||| ||||    
T  5926885 gacgaaagacctatttaagccaaaa 5926909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 739339 - 739220
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| |||| ||| ||||| |||||||| ||||| ||||| |    
T  739339 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcaaggacgaaaattcaaatggtctatatttgcagg 739240  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  739239 gacgaaaaacctatttaagc 739220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 37152802 - 37152921
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| ||||| || ||||| |||||||| ||||| ||||| |    
T  37152802 tgtaattaggactaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagagacgaaaattcaaatggactatatttgcagg 37152901  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  37152902 gacgaaagacatatttaagc 37152921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 52563770 - 52563656
Alignment:
Q  76 gtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagg 175  Q
    ||||||||||| ||   |||| |||||| || || ||| ||||||||||||||||||||||  ||| ||||||||   |||||  |||||| ||||| ||    
T  52563770 gtaattaggaccaaaactcaagtgattaatatttgcagtggcaaaatgggaggattagtaacctcaaggatgaaattccaaataccctatatttgcaggg 52563671  T
Q  176 atgaaatgcgtattt 190  Q
    ||||||||| |||||    
T  52563670 atgaaatgcatattt 52563656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 1047486 - 1047587
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| ||||| || ||||| ||||||| |||||| || || ||||||||  | |||||||    
T  1047486 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagagacgaaaattcaaatgacctatatttacagggatgaaagacatatttaa 1047585  T
Q  193 gc 194  Q
    ||    
T  1047586 gc 1047587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 25414946 - 25414873
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| ||||| || ||||| ||||||||||||||    
T  25414946 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagagaagaaaattcaaatggcctata 25414873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 26953203 - 26953102
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||  ||||||||||| |||||||| ||||| |||||| | ||||| ||||||||| ||||  | |||||||    
T  26953203 tcaaatgattaatatttgcaggggcagattgaaaggattagtaacttcagggacgaaaattcaaatagtctatatttgcaaggacgaaagacatatttaa 26953104  T
Q  193 gc 194  Q
    ||    
T  26953103 gc 26953102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 5926621 - 5926533
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| |  || |||||||| | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| ||| ||||    
T  5926621 tcaaatgattaatgtttgcaggggcatattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaa 5926533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 28534820 - 28534868
Alignment:
Q  118 aaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    ||||||| |||||||||||||||||||||||||  ||||||| ||||||    
T  28534820 aaaatggaaggattagtaagttcagggatgaaatttcaaatgccctata 28534868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 49002978 - 49002890
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||| ||| ||||| ||||||| |||||| ||||| ||| ||||    
T  49002978 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcatggacgaaaattcaaatgacctatatttgcagggacgaaa 49002890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 182
Target Start/End: Original strand, 36381375 - 36381509
Alignment:
Q  47 ctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggat 146  Q
    ||||||||||||||||||||||||   |  | |||| ||| || |||||| ||||||  ||||  ||||  | ||| |||||||||||||||||| ||||    
T  36381375 ctaattaccctccacctcagcaaaaaata-tgattatgaccaaatttcaagtgattaacaattgtagggaaagaataggaggattagtaagttcaaggat 36381473  T
Q  147 gaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
     |||  |||||| ||||||| ||||| |||||||||    
T  36381474 aaaatttcaaatagcctatatttgcagggatgaaat 36381509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 48380801 - 48380682
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| |  || ||  |||| | ||| ||||||||||| ||||| || ||||| ||||||| |||||| || ||||    
T  48380801 tgtaattaggaccatttttcaaatgattaatttttgcactggcagattggaaggattagtaacttcagcgacgaaaattcaaatgacctatatttacaag 48380702  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  48380701 gacgaaagacctatttaagc 48380682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 49003139 - 49003258
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || ||| |||| | ||| ||||||||||| |||| ||| ||||| ||||||| |||||| ||||| |    
T  49003139 tgtaattaggaccaaaaatcaaatgattaatatttgcagaggcagattggaaggattagtaacttcatggacgaaaattcaaatgacctatatttgcagg 49003238  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  49003239 gacgaaagacctatttaagc 49003258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 6056660 - 6056762
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagtt-cagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattta 191  Q
    ||||||||||| || || |||||||| | ||  ||||||||||| || |||||||||||| ||||||||| |||| ||||| ||| ||||  | ||||||    
T  6056660 tcaaatgattaatatttgcaggggcagattgaaaggattagtaacttacagggatgaaaattcaaatggcttatatttgcagggacgaaagacatattta 6056759  T
Q  192 agc 194  Q
    |||    
T  6056760 agc 6056762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 33347680 - 33347786
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || || ||||| | ||| ||||||||||| |||| ||| ||||| ||||||| |||||| ||||| |    
T  33347680 tgtaattaggaccaaaagtcaaatgattaatatttgcaagggcagattggaaggattagtaacttcaaggacgaaaattcaaatgacctatatttgcagg 33347779  T
Q  175 gatgaaa 181  Q
    || ||||    
T  33347780 gacgaaa 33347786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 46849918 - 46849852
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||||||| ||||| ||||||| | |||| ||||||||||||||  | |||||||||    
T  46849918 gattagtaacttcagggacgaaaattcaaatgacatatatttgcaaggatgaaagacctatttaagc 46849852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 33030454 - 33030357
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    |||||||||||  | |||||||||||||  || || ||| |||| | ||| || |||||||| |||||||| ||||| ||||||| |||||| |||||    
T  33030454 tgtaattaggatcatttttcaaatgattcatatttgcagtggcagattggaagaattagtaacttcagggacgaaaattcaaatgacctatatttgca 33030357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 37152640 - 37152567
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    |||||||||||||| || || ||||| | ||| ||||||||||| |||| ||| ||||| ||||||| ||||||    
T  37152640 tcaaatgattagtatttgcacgggcagattggaaggattagtaacttcatggacgaaaattcaaatgacctata 37152567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 21977923 - 21978112
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    |||||||||||||||| |||||| ||| ||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  21977923 ctgctgatgtgtcctgccaaaaccccagtcaccaagtgccacgtagctaatcaccctccacctcagcaaaattttgtaattaggacgaattttcaaatga 21978022  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| || |||||||| || |||||    
T  21978023 ttagtaattacaggggcaaagtgggaggattagtaagctcagggatgaaaaatcaaatggcccataattacagggatgaaaagcatattt 21978112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 21972283 - 21972104
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    |||||||||||||||| |||||| ||| ||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  21972283 ctgctgatgtgtcctgccaaaaccccagtcaccaagtgccacgtagctaatcaccctccacctcagcaaaattttgtaattaggacgaattttcaaatga 21972184  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    |||||||||||||| |||||||||||||||||||||| | | |||||||||||||||||||| |||||| || ||||||||    
T  21972183 ttagtaattacaggagcaaaatgggaggattagtaagctga-ggatgaaaaatcaaatggcccataattacagggatgaaa 21972104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 8654302 - 8654108
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgt-aattaggacgaattttcaaatg 99  Q
    ||||||| |||| ||| |||||  ||||||  || |||||||||| ||||||||||||||||||| ||  ||||| | ||||||||||||||||||||||    
T  8654302 ctgctgacgtgttctggcaaaaaaccattcgtcagatgccacgtatctaattaccctccacctcaacattttttttttaattaggacgaattttcaaatg 8654203  T
Q  100 attagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    |||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| || ||||||||  | |||||||||    
T  8654202 attagtaattgcagggacaaaatgggaggattagtaagctcatggatgaaaaatcaaatgacctataattacagggatgaaaaacatatttaagc 8654108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 14744692 - 14744829
Alignment:
Q  57 tccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaa 156  Q
    ||||||| ||||||||||| |||||||||||||  |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||    
T  14744692 tccacctaagcaaatttttttaattaggacgaaaattcaaatgattaatatttgcaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaa 14744791  T
Q  157 atggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||| | |||||||||| ||||||||||| |||||||||    
T  14744792 atgacatataattgcagggatgaaatgcatatttaagc 14744829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 20072857 - 20072968
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| || ||||||||     
T  20072857 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacgacctataattacagggatgaaaa 20072956  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  20072957 gcatatttaagc 20072968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 36476877 - 36476770
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||     
T  36476877 ggacgaactttcaaatgattagtaattacaagggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattgcagggatgaaaa 36476778  T
Q  183 gcgtattt 190  Q
    || |||||    
T  36476777 gcatattt 36476770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 36477364 - 36477471
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||     
T  36477364 ggacgaactttcaaatgattagtaattacaggggcaaaatgggaggattagtaagctcatggatgaaaaatcaaacggcctataattgcagggatgaaaa 36477463  T
Q  183 gcgtattt 190  Q
    || |||||    
T  36477464 gcatattt 36477471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 39181169 - 39181058
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||     
T  39181169 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcttataattacagggatgaaaa 39181070  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  39181069 gcatatttaagc 39181058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 16533005 - 16532898
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| || ||||||||     
T  16533005 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattaataagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 16532906  T
Q  183 gcgtattt 190  Q
    || |||||    
T  16532905 gcatattt 16532898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 20072233 - 20072122
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| ||  |||||||     
T  20072233 ggacgaactttcaaatgattagtaattacaggggcaaaatgaaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagagatgaaaa 20072134  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  20072133 gcatatttaagc 20072122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 22870451 - 22870561
Alignment:
Q  84 gacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatg 183  Q
    |||||| ||| ||||||||| |  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||    
T  22870451 gacgaaattttaaatgattaatttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaatg 22870550  T
Q  184 cgtatttaagc 194  Q
    | |||||||||    
T  22870551 catatttaagc 22870561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 39181784 - 39181900
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| || |||| |||     
T  39181784 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacgacctataattacagggattaaaa 39181883  T
Q  183 gcgtatttaagctaaaa 199  Q
     | ||||||||| ||||    
T  39181884 acatatttaagccaaaa 39181900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 16533613 - 16533724
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||  | ||||||||     
T  16533613 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattaataagttcagagatgaaaaatcaaacggcctataattatagggatgaaaa 16533712  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  16533713 gcatatttaagc 16533724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 31108015 - 31107932
Alignment:
Q  111 caggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  31108015 caggggtaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagc 31107932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 22869717 - 22869616
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||| ||||| ||| |  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  22869717 ggacgaaattttaaatggttaatttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacaaggatgaaat 22869618  T
Q  183 gc 184  Q
    ||    
T  22869617 gc 22869616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 20857044 - 20856933
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||     
T  20857044 ggacgaaatttcaaatgattaacttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattacagggatgaaaa 20856945  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  20856944 gcatatttaagc 20856933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 20857535 - 20857646
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||    |||||||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||| || ||||||||     
T  20857535 ggacgaaatttcaaatgattaacttttacaggggcaaaatgggaggattagtaagcttaggaatgaaaaatcaaacggcctataattacatggatgaaaa 20857634  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  20857635 gcatatttaagc 20857646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 8673739 - 8673853
Alignment:
Q  76 gtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaagg 175  Q
    |||||||||| ||| |||||||||||||  |||| || |||||||||||||| ||||| ||||||| ||||||||  |||||||||||||| ||||| ||    
T  8673739 gtaattaggatgaaatttcaaatgattaacaattgcaagggcaaaatgggagaattagcaagttcaaggatgaaatttcaaatggcctatatttgcaggg 8673838  T
Q  176 atgaaatgcgtattt 190  Q
    ||||||||| |||||    
T  8673839 atgaaatgcatattt 8673853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 21978955 - 21979070
Alignment:
Q  79 attaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatg 178  Q
    |||||||| || || ||||| |||| |  ||||||||  ||||| |||||||||||||||||  ||||||||||||||||||| |||||||||| |||||    
T  21978955 attaggactaaattccaaattattaatttttacagggataaaataggaggattagtaagttcgaggatgaaaaatcaaatggcttataattgcagggatg 21979054  T
Q  179 aaatgcgtatttaagc 194  Q
    |||||| |||||||||    
T  21979055 aaatgcatatttaagc 21979070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 39402146 - 39402210
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaa 157  Q
    ||||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||||||    
T  39402146 tcaaatgattaatatttgcaggggcaaaatgggaggattagtaagtccagggatgaaaaatcaaa 39402210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 25253206 - 25253086
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||||| ||| ||||||||||| |||||||| ||||| |||||||  ||||| ||||| |    
T  25253206 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaatgaactatatttgcagg 25253107  T
Q  175 gatgaaatgcgtatttaagct 195  Q
    |||||||  | ||||||||||    
T  25253106 gatgaaagacatatttaagct 25253086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 25316996 - 25316876
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||||| ||| ||||||||||| |||||||| ||||| |||||||  ||||| ||||| |    
T  25316996 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaatgaactatatttgcagg 25316897  T
Q  175 gatgaaatgcgtatttaagct 195  Q
    |||||||  | ||||||||||    
T  25316896 gatgaaagacatatttaagct 25316876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 14745568 - 14745449
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| |||||||||||||| ||||||| |||||| ||||| |    
T  14745568 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaatgacctatatttgcagg 14745469  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  14745468 gacgaaagacctatttaagc 14745449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 37945114 - 37944995
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||||| ||| ||||||||||| |||||||| ||||| ||||||| |||||| || ||||    
T  37945114 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttacaag 37945015  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  37945014 gacgaaagacctatttaagc 37944995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 31108338 - 31108434
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||| || ||||||||  ||||||| | |||||||||||||| |||||||||||||||| | ||||| ||||| ||||||||| | |||||||    
T  31108338 aaatgattaatatttacagggataaaatggaaagattagtaagttcatggatgaaaaatcaaat-gtctatatttgcagggatgaaatacatatttaa 31108434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 7015773 - 7015892
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| || || ||| |||| | ||| ||||||||||| |||||||| ||||| ||||| | | |||| |||||||    
T  7015773 tgtaattaggactatttttcaaatgattaatatttgcagtggcagattggaaggattagtaacttcagggacgaaaattcaaacgacttatatttgcaag 7015872  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  7015873 gacgaaagacctatttaagc 7015892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 21260970 - 21260879
Alignment:
Q  90 ttttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    |||||||||||||| || || ||  |||||||||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| ||| ||||    
T  21260970 ttttcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaa 21260879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 22024134 - 22024253
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| || || ||| |||||| ||| ||||||||||| || || || ||||| ||||||| |||||| |||||      
T  22024134 tgtaattaggaccatttttcaaatgattaatatttgcagtggcaaattggaaggattagtaacttaagtgacgaaaattcaaatgacctatatttgcaga 22024233  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  |||||||||||    
T  22024234 gacgaaagacgtatttaagc 22024253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 32052488 - 32052607
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| |    
T  32052488 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagg 32052587  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  32052588 gacgaaagacatatttaagc 32052607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 33735577 - 33735696
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| |    
T  33735577 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagg 33735676  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  33735677 gacgaaagacctatttaagc 33735696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 25253368 - 25253469
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    |||||||||||||| || || ||||| | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| ||| ||||  | |||||||    
T  25253368 tcaaatgattagtatttgcaagggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaa 25253467  T
Q  193 gc 194  Q
    ||    
T  25253468 gc 25253469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 25317159 - 25317260
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    |||||||||||||| || || ||||| | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| ||| ||||  | |||||||    
T  25317159 tcaaatgattagtatttgcaagggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaa 25317258  T
Q  193 gc 194  Q
    ||    
T  25317259 gc 25317260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 33735415 - 33735342
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    ||||||||||| || || ||||| || | ||| ||||||||||| |||||||| ||||||||||||||||||||    
T  33735415 tcaaatgattaatatttgcagggacagattggaaggattagtaatttcagggacgaaaaatcaaatggcctata 33735342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 22533654 - 22533760
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| || || ||  ||||| || | ||||||||||| ||| |||| ||||| ||||||| |||||| ||||| |    
T  22533654 tgtaattaggaccatttttcaaatgattaatatttgcaatggcaacattgaaggattagtaacttcggggacgaaaattcaaatgacctatatttgcagg 22533753  T
Q  175 gatgaaa 181  Q
    || ||||    
T  22533754 gacgaaa 22533760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 7015610 - 7015509
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || ||| |||| | ||| | ||||||||| |||| ||||||||| |||||||||||||| ||||| ||| ||||  | |||||||    
T  7015610 tcaaatgattaatatttgcagtggcagattggaatgattagtaacttcatggatgaaaattcaaatggcctatatttgcagggacgaaagacctatttaa 7015511  T
Q  193 gc 194  Q
    ||    
T  7015510 gc 7015509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 18934834 - 18934713
Alignment:
Q  74 ttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaa 173  Q
    ||||||||| ||| | ||||||||||| || || || ||  |||||||||  ||||||||||| |||| ||| ||||| ||||||| | |||| |||||     
T  18934834 ttgtaattatgaccatttttcaaatgactaatatttgcaatggcaaaatgaaaggattagtaacttcatggacgaaaattcaaatgacttatatttgcag 18934735  T
Q  174 ggatgaaatgcgtatttaagct 195  Q
    ||||||||  | ||||||||||    
T  18934734 ggatgaaagacatatttaagct 18934713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 21978211 - 21978167
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaa 119  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||    
T  21978211 tgtaattaggacgaattttcaaatgattaatttttacaggggcaa 21978167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 31119019 - 31118969
Alignment:
Q  131 tagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    |||||| |||||||||||||| |||||||||||||| ||||| ||| ||||    
T  31119019 tagtaacttcagggatgaaaattcaaatggcctatatttgcagggacgaaa 31118969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 14745595 - 14745668
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    ||||||||||| || || || ||||| | ||| ||||||||||| ||||| || ||||| ||||||||||||||    
T  14745595 tcaaatgattaatatttgcaagggcagattggaaggattagtaacttcagcgacgaaaattcaaatggcctata 14745668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 16118215 - 16118348
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||| | || || ||  ||| |||||| | ||||||||  || ||||| ||||| ||||| ||| |||| ||||| |    
T  16118215 tgtaattaggaccatttttcaaatgatgaatatttgcaatggcgaaatggaaagattagtatctttagggacgaaaattcaaacggcttatatttgcagg 16118314  T
Q  175 gatgaaatgcgtatttaagctaaaataaaataaa 208  Q
    |||||||  | ||||||||| || | ||||||||    
T  16118315 gatgaaagacctatttaagccaagaaaaaataaa 16118348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 32052326 - 32052253
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    ||||||||||| || || |||||||  | ||| ||||||||||| |||||||| ||||| ||||||| ||||||    
T  32052326 tcaaatgattaatatttgcaggggcggattggaaggattagtaacttcagggacgaaaattcaaatgacctata 32052253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 8323161 - 8323085
Alignment:
Q  90 ttttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    |||||||||||||| ||  | ||  |||||||||| ||||||||||| |||| ||| ||||| ||||||| ||||||    
T  8323161 ttttcaaatgattaatatcttcaatggcaaaatggaaggattagtaacttcatggacgaaaattcaaatgacctata 8323085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 19892338 - 19892294
Alignment:
Q  165 taattgcaaggatgaaatgcgtatttaag-ctaaaataaaataaa 208  Q
    |||||||||||||||||| | |||||||| |||||||||||||||    
T  19892338 taattgcaaggatgaaatacatatttaagtctaaaataaaataaa 19892294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 20101963 - 20101758
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    ||||||| ||||||||||||||  |||||| ||| |||||||||| ||||||| | ||||||||||||| ||||| ||||||||||||||||||||||||    
T  20101963 ctgctgacgtgtcctgacaaaaaaccattcgccagatgccacgtatctaattagcatccacctcagcaatttttt-taattaggacgaattttcaaatga 20101865  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaag-ctaaaa 199  Q
    ||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| || |||||||| ||||||    
T  20101864 ttattaattgcaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacagggatgaaaagcatatttaagcctaaaa 20101765  T
Q  200 taaaata 206  Q
    | |||||    
T  20101764 ttaaata 20101758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 20103107 - 20103243
Alignment:
Q  57 tccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaa 156  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |    
T  20103107 tccacctcagcaatttttt-taattaggacgaattttcaaatgattagtaattgcatgggcaaaatgggaggattagtaagctcagggatgaaaaatcta 20103205  T
Q  157 atggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||||||| || |||| ||| || |||||||||    
T  20103206 atggcctataattacagggataaaaagcatatttaagc 20103243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 24387471 - 24387352
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    ||||||||||||||||||||||||||||| |  ||||| || ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |    
T  24387471 tgtaattaggacgaattttcaaatgattaatttttacatggacaaaatgggaggattagtaagctcagggatgaaaaattaaatggcctataattgcagg 24387372  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    |||||||||| |||||||||    
T  24387371 gatgaaatgcatatttaagc 24387352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 29957929 - 29957818
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     
T  29957929 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 29957830  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  29957829 gcatatttaagc 29957818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 20983249 - 20983371
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| || ||||||||     
T  20983249 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggtctataattacagggatgaaaa 20983348  T
Q  183 gcgtatttaagctaaaataaaat 205  Q
    || ||||||||| |||| |||||    
T  20983349 gcatatttaagccaaaaaaaaat 20983371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 20982628 - 20982525
Alignment:
Q  91 tttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| || |||||    
T  20982628 tttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaagcatattt 20982529  T
Q  191 aagc 194  Q
    ||||    
T  20982528 aagc 20982525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 25624421 - 25624541
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||| ||||||||| |  ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |||||||||    
T  25624421 ggacgaaattttaaatgattaatttttacaggggaaaaatgggaggattagtaagctcagggatgaaaaatcaaatgacctataattacagggatgaaat 25624520  T
Q  183 gcgtatttaagctaaaataaa 203  Q
    || ||||||||| ||||||||    
T  25624521 gcatatttaagccaaaataaa 25624541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 25623400 - 25623289
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| ||| ||||||||| |  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | |||||||||    
T  25623400 ggacgaaattttaaatgattaatttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattatagggatgaaat 25623301  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  25623300 gcatatttaagc 25623289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 23206322 - 23206496
Alignment:
Q  9 gtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaat 108  Q
    ||||||||||||||  ||| ||||||   ||||| || ||||||||| ||||| | ||||||||||| |||||||||||||||||| |||| ||| || |    
T  23206322 gtgtcctgacaaaaacccagtcaccagtcgccacatatctaattaccatccacgtaagcaaatttttttaattaggacgaattttcgaatgcttaatatt 23206421  T
Q  109 tacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatg 183  Q
    | ||| ||||||||| |||||||||||| |||| ||||||||  ||||||| |||||| |||||| |||||||||    
T  23206422 tgcagtggcaaaatgagaggattagtaacttcaaggatgaaatttcaaatgccctatatttgcaaagatgaaatg 23206496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 23677926 - 23678100
Alignment:
Q  9 gtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaat 108  Q
    ||||||||||||||  ||| ||||||   ||||| || ||||||||| ||||| | ||||||||||| |||||||||||||||||| |||| ||| || |    
T  23677926 gtgtcctgacaaaaacccagtcaccagtcgccacatatctaattaccatccacgtaagcaaatttttttaattaggacgaattttcgaatgcttaatatt 23678025  T
Q  109 tacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatg 183  Q
    | ||| ||||||||| |||||||||||| |||| ||||||||  ||||||| |||||| |||||| |||||||||    
T  23678026 tgcagtggcaaaatgagaggattagtaacttcaaggatgaaatttcaaatgccctatatttgcaaagatgaaatg 23678100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 29958536 - 29958646
Alignment:
Q  84 gacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatg 183  Q
    |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| || ||||||||      
T  29958536 gacgaactttcaaatgattagtaattataggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacagcctataattacagggatgaaaaa 29958635  T
Q  184 cgtatttaagc 194  Q
    | |||||||||    
T  29958636 catatttaagc 29958646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 24388276 - 24388355
Alignment:
Q  115 ggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    |||||||||| |||||||||||| |||||||||||||||||||| || |||||||||| ||||||||||| |||||||||    
T  24388276 ggcaaaatggaaggattagtaagctcagggatgaaaaatcaaattgcttataattgcagggatgaaatgcatatttaagc 24388355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 19620777 - 19620882
Alignment:
Q  79 attaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatg 178  Q
    ||||||| |||  |||||||||||| || || |||||||||||||| |||||||||||||||||||||||||  ||||||| |||||| ||| | ||| |    
T  19620777 attaggatgaaaattcaaatgattaatatttgcaggggcaaaatggaaggattagtaagttcagggatgaaatttcaaatgacctatatttgtagggacg 19620876  T
Q  179 aaatgc 184  Q
    ||||||    
T  19620877 aaatgc 19620882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 21103193 - 21103108
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataat 168  Q
    ||||||| |||| || ||||||||||||||| || ||||||  ||||||||||||||||||||||||||| |||| ||||||||||    
T  21103193 ggacgaactttcgaaggattagtaattacagtggtaaaatgaaaggattagtaagttcagggatgaaaaaccaaacggcctataat 21103108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 43236577 - 43236509
Alignment:
Q  122 tgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    |||||||||||||||||||||||||||||  |||||||||||||| ||||| |||| |||||| |||||    
T  43236577 tgggaggattagtaagttcagggatgaaatttcaaatggcctatatttgcagggataaaatgcatattt 43236509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 9694006 - 9694125
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| || || ||  | |||||||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| |    
T  9694006 tgtaattaggaccatttttcaaatgattaatatttgcaatgacaaaatggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcatg 9694105  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  9694106 gacgaaagacctatttaagc 9694125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 16367227 - 16367333
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| |||||||||||||| ||||| |    
T  16367227 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaacttcagggacgaaaattcaaatggcctatatttgcagg 16367326  T
Q  175 gatgaaa 181  Q
    || ||||    
T  16367327 gacgaaa 16367333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 23183784 - 23183635
Alignment:
Q  9 gtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaat 108  Q
    ||||||||| ||||  ||| ||||||   |||||||| ||| ||||| ||||||||||||||   || ||||||||||||||||| ||||| ||| || |    
T  23183784 gtgtcctgaaaaaaacccaatcaccagccgccacgtaactacttaccatccacctcagcaaaaaatt-taattaggacgaatttttaaatgcttaatatt 23183686  T
Q  109 tacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatg 159  Q
    | ||| |||||||| ||||||||||||| |||  ||||||||  |||||||    
T  23183685 tgcagtggcaaaataggaggattagtaacttcttggatgaaatttcaaatg 23183635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 23595041 - 23594892
Alignment:
Q  9 gtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaat 108  Q
    ||||||||| ||||  ||| ||||||   |||||||| ||| ||||| ||||||||||||||   || ||||||||||||||||| ||||| ||| || |    
T  23595041 gtgtcctgaaaaaaacccaatcaccagccgccacgtaactacttaccatccacctcagcaaaaaatt-taattaggacgaatttttaaatgcttaatatt 23594943  T
Q  109 tacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatg 159  Q
    | ||| |||||||| ||||||||||||| |||  ||||||||  |||||||    
T  23594942 tgcagtggcaaaataggaggattagtaacttcttggatgaaatttcaaatg 23594892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 28599547 - 28599441
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| || || ||  |||||||||| ||||||||||| |||| ||| ||||| |||||||  ||||| |||||||    
T  28599547 tgtaattaggaccatttttcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttcatggacgaaaattcaaatgatctatatttgcaag 28599448  T
Q  175 gatgaaa 181  Q
    || ||||    
T  28599447 gacgaaa 28599441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 1150057 - 1149938
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||  | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| |    
T  1150057 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggccgattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagg 1149958  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||| | |||||||||    
T  1149957 gacgaaatacctatttaagc 1149938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 10446932 - 10446833
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||||  | |||||||||    
T  10446932 aaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggcctatatttgcagggacgaaagacatatttaagc 10446833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 17366746 - 17366627
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||| ||||||||| || || ||| |||| | ||| ||||||| ||| |||||||| ||||| ||||||| |||||| ||||| |    
T  17366746 tgtaattaggaccattttttaaatgattaatatttgcagtggcagattggaaggattattaaattcagggaagaaaattcaaatgacctatatttgcatg 17366647  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    |||||||  | |||||||||    
T  17366646 gatgaaagacctatttaagc 17366627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 20911232 - 20911131
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| ||| ||||  | |||||||    
T  20911232 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacctatttaa 20911133  T
Q  193 gc 194  Q
    ||    
T  20911132 gc 20911131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 43237747 - 43237815
Alignment:
Q  122 tgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||||||||||||||||||||||| |||  |||||||||||||| ||||| |||  |||||| |||||    
T  43237747 tgggaggattagtaagttcagggataaaatttcaaatggcctatatttgcagggacaaaatgcatattt 43237815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 16367065 - 16366992
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| ||||||| ||||||    
T  16367065 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctata 16366992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 32519257 - 32519156
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||| ||| | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| ||| ||||  | |||||||    
T  32519257 tcaaatgattaatatttgcaggagcatattggaaggattagtaatttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaa 32519158  T
Q  193 gc 194  Q
    ||    
T  32519157 gc 32519156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 13646198 - 13646130
Alignment:
Q  77 taattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcaggga 145  Q
    |||||||||| || ||| || |||||| || || |||||||||| ||||||||||||||||| ||||||    
T  13646198 taattaggaccaaattttaagtgattaatatttgcaggggcaaattgggaggattagtaagtacaggga 13646130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 13652075 - 13652143
Alignment:
Q  77 taattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcaggga 145  Q
    |||||||||| || ||| || |||||| || || |||||||||| ||||||||||||||||| ||||||    
T  13652075 taattaggaccaaattttaagtgattaatatttgcaggggcaaattgggaggattagtaagtacaggga 13652143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 1150219 - 1150298
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    ||||||||||| || || |||||||| | ||  ||||||||||| |||||||| ||||| ||||||| |||||| |||||    
T  1150219 tcaaatgattaatatttgcaggggcagattgaaaggattagtaatttcagggacgaaaattcaaatgacctatatttgca 1150298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 22309695 - 22309814
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| || || ||| | || | ||| |  |||||||| |||||||| ||||| ||||||| |||||| ||||| |    
T  22309695 tgtaattaggaccatttttcaaatgattaatatttgcagtgtcagattggaacaattagtaacttcagggacgaaaattcaaatgacctatatttgcagg 22309794  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  22309795 gaagaaagacctatttaagc 22309814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 7981120 - 7981070
Alignment:
Q  122 tgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    ||||||||||||||||||| |||||||||  ||||||| |||||| |||||    
T  7981120 tgggaggattagtaagttcggggatgaaatttcaaatgacctatagttgca 7981070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 17580452 - 17580505
Alignment:
Q  128 gattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||| |||||||| ||||| |||||||  ||||| ||||||||||||||    
T  17580452 gattagtaacttcagggacgaaaattcaaatgatctatatttgcaaggatgaaa 17580505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 18477140 - 18477257
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||| ||||||||| ||  | ||  |||||||||| | ||||||||| |||| ||| ||||| | ||||||| |||| ||||| |    
T  18477140 tgtaattaggaccatttttgaaatgattaatatcttcaatggcaaaatggaatgattagtaacttcatggacgaaaatttaaatggcttatatttgcagg 18477239  T
Q  175 gatgaaatgcgtatttaa 192  Q
    || ||||| | |||||||    
T  18477240 gacgaaatacatatttaa 18477257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 33882892 - 33882981
Alignment:
Q  115 ggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaag-ctaaaataaa 203  Q
    ||||||||||||||||||||||  |||   ||||||  ||||||| | |||| ||||| ||||||||||| ||||| || ||||||||||    
T  33882892 ggcaaaatgggaggattagtaacctcatatatgaaatttcaaatgccttatatttgcagggatgaaatgcatattttagtctaaaataaa 33882981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 5608858 - 5608942
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatg 159  Q
    |||||||||||| | |||||||||||||| || || ||  |||||||||  ||||||||||| || || || ||||| |||||||    
T  5608858 tgtaattaggaccatttttcaaatgattaatatttgcaatggcaaaatgaaaggattagtaactttagagaggaaaattcaaatg 5608942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 7983837 - 7983905
Alignment:
Q  122 tgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    ||||||||||||||||||||  |||||||  ||||||| |||||| ||||   |||||||||| |||||    
T  7983837 tgggaggattagtaagttcatagatgaaatttcaaatgacctatatttgctgagatgaaatgcatattt 7983905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 19619628 - 19619584
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaag 137  Q
    |||||| |||| || || |||||||||||||||||||||||||||    
T  19619628 tcaaataattaatatttgcaggggcaaaatgggaggattagtaag 19619584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 33881672 - 33881580
Alignment:
Q  98 tgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtattt 190  Q
    |||||| || || ||| ||||||||||||| |||| |||  | ||||||||||  ||||||| |||||| || || ||||||||||| |||||    
T  33881672 tgattaatatttgcagtggcaaaatgggagaattaataaccttagggatgaaatttcaaatgccctatatttacagggatgaaatgcatattt 33881580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 41846671 - 41846747
Alignment:
Q  90 ttttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    |||||||||||||| || || ||| |||| | ||| |||| |||||| |||||| | ||||| ||||||||||||||    
T  41846671 ttttcaaatgattaatatttgcagtggcagattggaaggagtagtaacttcaggaacgaaaattcaaatggcctata 41846747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 13328 - 13135
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    ||||||| ||||||||| ||||  |||||| ||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  13328 ctgctgacgtgtcctgaaaaaaaaccattcgccagatgccacgtatctaattaccctccacctcagcaattttttttaattaggacgaattttcaaatga 13229  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||||||||||||||||||||| |||  |||| ||||||||||||||||| ||||| || || |||||||| || |||||||||    
T  13228 ttagtaattgcaggggcaaaatgggaggattactaaactcagagatgaaaaatcaaatggtctatatttacagggatgaaaagcatatttaagc 13135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 14284 - 14476
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    ||||||| ||||||||||||||  ||||||  || ||||||| || ||||||||||||||||||||||  ||||| ||||||||| ||||||||||||||    
T  14284 ctgctgacgtgtcctgacaaaaaaccattcgtcagatgccacatatctaattaccctccacctcagcattttttt-taattaggatgaattttcaaatga 14382  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||| || |||||||||    
T  14383 ttagtaattgcaggggtaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattacaggggtgaaaagcatatttaagc 14476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 17784291 - 17784484
Alignment:
Q  1 ctgctgatgtgtcctgacaaaactccattcaccaaatgccacgtacctaattaccctccacctcagcaaatttttgtaattaggacgaattttcaaatga 100  Q
    ||||||| ||||||||||||||  ||| || | |  |||||| || ||||||||| |||||||||| || ||||| ||||||||||||||||| ||||||    
T  17784291 ctgctgacgtgtcctgacaaaaagccagtcgctagttgccacatatctaattaccatccacctcagtaattttttttaattaggacgaattttaaaatga 17784390  T
Q  101 ttagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||| || || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| || |||||||||    
T  17784391 ttaatatttgcaggggcaaaatgggaggattagtaagttcatggatgaaaaatcaaatggcctatcattgcagggatgaaaagcatatttaagc 17784484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 33400078 - 33399962
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||     
T  33400078 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaaa 33399979  T
Q  183 gcgtatttaagctaaaa 199  Q
    || ||||||||| ||||    
T  33399978 gcatatttaagccaaaa 33399962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 1661418 - 1661516
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||    
T  1661418 ggacgaactttcaaatgattagtaattacaggggtaaaatggaaggattagtaagttcagggatgaaaaatcaaacggcctataattacagggatgaaa 1661516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 33401116 - 33401225
Alignment:
Q  85 acgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgc 184  Q
    |||||| ||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||    
T  33401116 acgaatattcaaatgattaacttttacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaacggcctataattgcagggatgaaaagc 33401215  T
Q  185 gtatttaagc 194  Q
     |||||||||    
T  33401216 atatttaagc 33401225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 14657197 - 14657308
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||| |||||||||||  | ||||||||     
T  14657197 ggacgaactttcaaatgattagtaattacaggggcaaaatggaaggattagtaaggtcagggataaaaaatcaaacggcctataattatagggatgaaaa 14657296  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  14657297 gcatatttaagc 14657308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 4116911 - 4116800
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||     
T  4116911 ggacgaattttcaaatgattaacttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattacagggatgaaaa 4116812  T
Q  183 gcgtatttaagc 194  Q
     | |||||||||    
T  4116811 acatatttaagc 4116800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 4117535 - 4117646
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||     
T  4117535 ggacgaattttcaaatgattaacttttacaggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaacggcctataattacagggatgaaaa 4117634  T
Q  183 gcgtatttaagc 194  Q
     | |||||||||    
T  4117635 acatatttaagc 4117646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 14656592 - 14656481
Alignment:
Q  83 ggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaat 182  Q
    ||||||| |||||||||||||    ||||||||||||||| |||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||     
T  14656592 ggacgaactttcaaatgattaacttttacaggggcaaaataggaggattagtaagctcagggatgaaaaatcaaacagcctataattgcagggatgaaaa 14656493  T
Q  183 gcgtatttaagc 194  Q
    || |||||||||    
T  14656492 gcatatttaagc 14656481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 8427381 - 8427459
Alignment:
Q  111 caggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatt 189  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  8427381 caggggcaaaatgggaggattagtaagtccagggatgaaaaatcaaatgacctataattgcagggatgaaatgcatatt 8427459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 8427316 - 8427201
Alignment:
Q  79 attaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatg 178  Q
    ||||||| |||  ||||| |||||| || || |||||||||||||||||||||||||| || || || ||||| ||||||| |||||| |||||||||||    
T  8427316 attaggatgaaaattcaactgattaatatttgcaggggcaaaatgggaggattagtaacttgagagacgaaaattcaaatgacctatatttgcaaggatg 8427217  T
Q  179 aaatgcgtatttaagc 194  Q
    |||  | |||||||||    
T  8427216 aaagacatatttaagc 8427201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 23291864 - 23291744
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| |||||||||||||| |||||||||||||| ||| | |    
T  23291864 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaatggcctatatttgtagg 23291765  T
Q  175 gatgaaatgcgtatttaagct 195  Q
    || ||||  | ||||||||||    
T  23291764 gacgaaagacatatttaagct 23291744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 13480328 - 13480209
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| |||||||||||||| ||||| |    
T  13480328 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggcctatatttgcagg 13480229  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  13480228 gacgaaagacatatttaagc 13480209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 5064437 - 5064371
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatg 159  Q
    ||||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||| |||||||    
T  5064437 tcaaatgattaatatttgcaggggcaaattgggaggattagtaacttcagggacgaaaattcaaatg 5064371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 5064599 - 5064696
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    |||||||||||| ||   ||||||||||| || || |||||||| | ||| |||||||||||  ||||||| ||||| |||||||||||||| |||||    
T  5064599 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacctcagggacgaaaattcaaatggcctatatttgca 5064696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 3299823 - 3299943
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    ||||||||| || | |||||||||||||| || || ||  |||| | ||| ||||||||||| |||| ||| ||||| ||||||| |||||| ||||| |    
T  3299823 tgtaattagaaccatttttcaaatgattaatatttgcaatggcagattggaaggattagtaacttcaaggacgaaaattcaaatgacctatatttgcagg 3299922  T
Q  175 gatgaaatgcgtatttaagct 195  Q
    || ||||| | ||||||||||    
T  3299923 gacgaaatacatatttaagct 3299943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 32337666 - 32337578
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| |||||||| ||||| ||||| ||| ||||    
T  32337666 tcaaatgattaatatttgcaggggcatattggaaggattagtaacttcagggacgaaaattcaaatggtctatatttgcagggacgaaa 32337578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 7612668 - 7612549
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| || || ||  | |||||||  || |||||||| |||||||| ||||| |||||||| ||||| ||||| |    
T  7612668 tgtaattaggaccatttttcaaatgattaatatttgcaatgacaaaatgaaagaattagtaacttcagggacgaaaattcaaatggtctatatttgcagg 7612569  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  7612568 gacgaaagacctatttaagc 7612549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 32337833 - 32337928
Alignment:
Q  77 taattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgca 172  Q
    |||||||||||||   ||||||||||| || || |||||||| | ||| ||||| ||||| |||||||| ||||| ||||||| |||||| |||||    
T  32337833 taattaggacgaaaagtcaaatgattaatatttgcaggggcatattggaaggatcagtaacttcagggacgaaaattcaaatgacctatatttgca 32337928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 20994973 - 20995039
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatg 159  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||||||||||| |||||||    
T  20994973 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaatg 20995039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 13480490 - 13480591
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || ||  ||||||| | ||| ||||||||||| |||||||| ||||| ||||||| |||||| || |||||| ||||  | |||||||    
T  13480490 tcaaatgattaatatttgtaggggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttacaaggacgaaagacatatttaa 13480589  T
Q  193 gc 194  Q
    ||    
T  13480590 gc 13480591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 15819772 - 15819873
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    |||||||||||||| || || ||| | | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| ||| ||||  | |||||||    
T  15819772 tcaaatgattagtatttgcaagggtagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaa 15819871  T
Q  193 gc 194  Q
    ||    
T  15819872 gc 15819873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 30234874 - 30234975
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||||||||||| |||||   |||||| ||||| ||| ||||  | |||||||    
T  30234874 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggatgaaaattcaaacaacctatatttgcagggacgaaagacatatttaa 30234973  T
Q  193 gc 194  Q
    ||    
T  30234974 gc 30234975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 737961 - 738080
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || ||  ||||||| | ||| ||||||||||| |||| ||| ||||| ||||||| |||||| ||||| |    
T  737961 tgtaattaggaccaaaagtcaaatgattaatacttgaaggggcagattggaaggattagtaacttcatggacgaaaattcaaatgacctatatttgcagg 738060  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  738061 gacgaaagacatatttaagc 738080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 20774209 - 20774103
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| | |||||||||||||| || || ||  | |||||||  ||||||| ||| |||| ||| ||||| ||||||| | |||| ||| |||    
T  20774209 tgtaattaggaccatttttcaaatgattaatatttgcaatgacaaaatgaaaggattaataacttcaaggacgaaaattcaaatgacatatatttgtaag 20774110  T
Q  175 gatgaaa 181  Q
    |||||||    
T  20774109 gatgaaa 20774103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 23292026 - 23292132
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||  | | ||| ||||||||||| |||||||| ||||| ||||||| |||||| ||||| ||| ||||  | |||||||    
T  23292026 tcaaatgattaatatttgcagggatagattggaaggattagtaacttcagggacgaaaattcaaatgacctatatttgcatggacgaaagacatatttaa 23292125  T
Q  193 gctaaaa 199  Q
    || ||||    
T  23292126 gccaaaa 23292132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 9607598 - 9607686
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaa 181  Q
    ||||||||||| || || |||||||| | | | ||||||||||| |||| ||| ||||| ||||||| |||||| ||||| ||| ||||    
T  9607598 tcaaatgattaatatttgcaggggcatattagaaggattagtaacttcatggacgaaaattcaaatgacctatatttgcagggacgaaa 9607686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 16704624 - 16704692
Alignment:
Q  126 aggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||||| |||| ||| ||||| |||||||||||||| ||||| ||| ||||  | |||||||||    
T  16704624 aggattagtaacttcaaggacgaaaattcaaatggcctatatttgcagggacgaaagacctatttaagc 16704692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 31879577 - 31879493
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatg 159  Q
    |||||||||||| | ||||||||| |||| || || ||  |||||||||| | ||||||||| ||| |||| ||||| |||||||    
T  31879577 tgtaattaggaccatttttcaaattattaatatttgcaatggcaaaatggaaagattagtaacttcggggacgaaaattcaaatg 31879493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 261139 - 260990
Alignment:
Q  57 tccacctcagcaaatttttgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaa 156  Q
    ||||||| ||||||||||| |||||||| ||||  |||||||||||| || || |||||||||||||||||||||||||| |||| ||||||||||||||    
T  261139 tccacctaagcaaatttttttaattaggtcgaaaattcaaatgattaatatttgcaggggcaaaatgggaggattagtaaattcatggatgaaaaatcaa 261040  T
Q  157 atggcctataattgcaaggatgaaatgcgtatttaagctaaaataaaata 206  Q
    ||| |||||||||||| ||||||||||| |||||||||  ||||||||||    
T  261039 atgacctataattgcagggatgaaatgcatatttaagcctaaataaaata 260990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 262441 - 262540
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| || || |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||    
T  262441 aaatgattaatatttgcaggggaaaaatgggaggattagtaagttcagggatgaaaaatcaaatgacctataattacagggatgaaatgcatatttaagc 262540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 695 - 582
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||| |||||||    
T  695 tcaaatgattaatatttgcaggggcaaaatgagaggattagtaagttcagggatgaaaaatcaaatgacctataattgcagtgatgaaatgcatatttaa 596  T
Q  193 g-ctaaaataaaat 205  Q
    | ||||||||||||    
T  595 gcctaaaataaaat 582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 875 - 944
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcc 162  Q
    ||||||||||| || || |||||||| | ||| ||||||||||| |||||||| ||||| ||||||||||    
T  875 tcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggacgaaaattcaaatggcc 944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 13709 - 13610
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaagc 194  Q
    ||||||||| |  ||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  13709 aaatgattaatttttataggggcaaaatggaaggattagtaagctcagggatgaaaaatcaaatggcctataattgcagggatgaaatgcatatttaagc 13610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 14593 - 14691
Alignment:
Q  95 aaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaag 193  Q
    ||||||||| |  ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||||||||| ||||||||    
T  14593 aaatgattaatttttataggggcaaaatgggaggattagtaagctcagggatgaaaaatcaaatggcctataattgaaggaatgaaatgcatatttaag 14691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 8553 - 8462
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctata 166  Q
    |||||||||||| | |||||||||||||| || || ||| |||| | ||| ||||||||||| |||||||| ||||| ||||||| ||||||    
T  8553 tgtaattaggaccatttttcaaatgattaatatttgcagtggcagattggaaggattagtaacttcagggacgaaaattcaaatgacctata 8462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 10445 - 10326
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||||||||| ||   ||||||||||| || || |||||||||| ||| ||||||||||| |||||||| ||||| |||||||  ||||| ||||| |    
T  10445 tgtaattaggaccaaaagtcaaatgattaatatttgcaggggcaaattggaaggattagtaacttcagggacgaaaattcaaatgatctatatttgcagg 10346  T
Q  175 gatgaaatgcgtatttaagc 194  Q
    || ||||  | |||||||||    
T  10345 gacgaaagacctatttaagc 10326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 14355 - 14249
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaag 174  Q
    |||||| ||||||| ||||||||| |||| || || ||| |||||| ||| |||||||||||  ||| ||| ||||| ||||||| | |||| ||||| |    
T  14355 tgtaatcaggacgatttttcaaattattaatatttgcagtggcaaattggaaggattagtaacctcaaggacgaaaattcaaatgacttatatttgcagg 14256  T
Q  175 gatgaaa 181  Q
    || ||||    
T  14255 gacgaaa 14249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 10764 - 10663
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || |||||||| | ||  ||||||| ||| |||||||| ||||| ||||||||| |||| ||||| || |||||  | |||||||    
T  10764 tcaaatgattaatatttgcaggggcatattgaaaggattaataatttcagggacgaaaattcaaatggcttatatttgcaggggtgaaagacctatttaa 10665  T
Q  193 gc 194  Q
    ||    
T  10664 gc 10663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 10955 - 10854
Alignment:
Q  93 tcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatggcctataattgcaaggatgaaatgcgtatttaa 192  Q
    ||||||||||| || || ||  |||||||||| ||||||||||| |||  ||| ||||| ||||||| |||||| ||||| ||| ||||  | |||||||    
T  10955 tcaaatgattaatatttgcaatggcaaaatggaaggattagtaacttcgtggacgaaaattcaaatgacctatatttgcagggacgaaagacctatttaa 10856  T
Q  193 gc 194  Q
    ||    
T  10855 gc 10854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 14157 - 14241
Alignment:
Q  75 tgtaattaggacgaattttcaaatgattagtaattacaggggcaaaatgggaggattagtaagttcagggatgaaaaatcaaatg 159  Q
    |||||||||||| ||   ||||||||||| || ||  ||||||| | ||| ||||||||||| ||||| |||||||| |||||||    
T  14157 tgtaattaggaccaaaagtcaaatgattaatatttgtaggggcagattggaaggattagtaacttcagtgatgaaaattcaaatg 14241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University