View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6641_low_134 (Length: 228)
Name: NF6641_low_134
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_134 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 52375731 - 52375504
Alignment:
| Q |
1 |
gtggctattgcatttgaattagttgcagctgttgcgccagaaactaatttccctctggaaatgctagcgctgatagcttccttcaaagataacgacggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52375731 |
gtggctattgcatttgaattagttgcagctgttgcgccagaaactaatttccctctggaaatgctagcgctgatagcttccttcaaagataacgacggtg |
52375632 |
T |
|
| Q |
101 |
ttgcattttgtgaaatgtcattgttgttgtgaagtttggtcatgctttgccatgatttgttgaattcaactaagctttttgttcctcctggtgaaccttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52375631 |
ttgcattttgtgaaatgtcattgttgttgtgaagtttggtcatgctttgccatgatttgttgaattcaactaagctttttgttcctcctggtgaaccttc |
52375532 |
T |
|
| Q |
201 |
caattcgcgaatcaggtctaacgcgaat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
52375531 |
caattcgcgaatcaggtctaacgcgaat |
52375504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University