View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_14 (Length: 577)
Name: NF6641_low_14
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 13 - 568
Target Start/End: Original strand, 9643921 - 9644476
Alignment:
| Q |
13 |
agcagagaggattttaagaagtgcattagagagagctttgatagtcgaagaagttcagaatgaaaactttgacttgaagagacagattgagatctgccag |
112 |
Q |
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| T |
9643921 |
agcagagaggattttaagaagtgcattagagagagctttgatagtcgaagaagttcagaatgaaaactttgacttgaagagacagatcgagatctgccag |
9644020 |
T |
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| Q |
113 |
gcatatatctttttatgtttccatttccgtgtatagtttctatatcaaacggcaatcagtttcagcaaaatttatacaacttttcatgaacaggaggaga |
212 |
Q |
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| T |
9644021 |
gcatatatctttttatgtttccatttccgtgtatagtttctatatcaaacggcaatcagtttcagcaaaatttatacaacttttcatgaacaggaggaga |
9644120 |
T |
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| Q |
213 |
acaaaatcttggagaaaagccaccgtcaaaagattgtggaagttgagaaacttagccaaacaattcatgaacttgaggagctcatcttatcaaatggagc |
312 |
Q |
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| T |
9644121 |
acaaaatcttggagaaaagccaccgtcaaaagattgtggaagttgagaaacttagccaaacaattcatgaacttgaggagctcatcttatcaaatggagc |
9644220 |
T |
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| Q |
313 |
caccgctaatctcattcgcgattataagcgacagatttctgagttgcaagtaggcatatgttaataatgttatgaccacttgcattttggactaactttt |
412 |
Q |
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| T |
9644221 |
caccgctaatctcattcgcgattataagcgacagatttctgagttgcaagtaggcatatgttaataatgttatgaccacttgcattttggactaactttt |
9644320 |
T |
|
| Q |
413 |
acataggacttttgtatctactggtttatctatacaataacatggttttagcataaattttcaggaggagaagaggacactagagagggaattagcaagg |
512 |
Q |
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| T |
9644321 |
acatgggacttttgtatctactggtttatctatacaataacatggttttagcataaattttcaggaggagaagaggacactagagagggaattagcaagg |
9644420 |
T |
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| Q |
513 |
gtaaaagtttctgctaacagaattgcaactgttgcggctaatgaatggaatgatga |
568 |
Q |
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| T |
9644421 |
gtaaaagtttctgctaacagaattgcaactgttgcggctaatgaatggaaagatga |
9644476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 201 - 364
Target Start/End: Original strand, 56006944 - 56007107
Alignment:
| Q |
201 |
aacaggaggagaacaaaatcttggagaaaagccaccgtcaaaagattgtggaagttgagaaacttagccaaacaattcatgaacttgaggagctcatctt |
300 |
Q |
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| T |
56006944 |
aacaggaggagaccaaaattttagagaaatctcaccgccaaaagattcttgaagttgaaaagcttagccaaaccattcaagaacttgaggaagtcatctt |
56007043 |
T |
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| Q |
301 |
atcaaatggagccaccgctaatctcattcgcgattataagcgacagatttctgagttgcaagta |
364 |
Q |
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| T |
56007044 |
agctaatggcgctacagctaacgttgttcgcgattaccaaagacagttttctgaattgcaagta |
56007107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 465 - 540
Target Start/End: Original strand, 56007183 - 56007258
Alignment:
| Q |
465 |
ataaattttcaggaggagaagaggacactagagagggaattagcaagggtaaaagtttctgctaacagaattgcaa |
540 |
Q |
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| T |
56007183 |
ataaattttcaggaggagaaaaggacactagagagggagctagaaagagtaaaagtttcggccaatagaattgcaa |
56007258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 56006755 - 56006856
Alignment:
| Q |
14 |
gcagagaggattttaagaagtgcattagagagagctttgatagtcgaagaagttcagaatgaaaactttgacttgaagagacagattgagatctgccagg |
113 |
Q |
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|||||||||||||| ||||||| |||||| ||| | ||| | ||||||||||| ||| |||| ||||| || |||||||||||||| |||| ||||| |
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| T |
56006755 |
gcagagaggattttgcaaagtgcactagagaaggctctaataattgaagaagttcaaaatcaaaattttgatttaaagagacagattgatatctaccagg |
56006854 |
T |
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| Q |
114 |
ca |
115 |
Q |
| |
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|| |
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| T |
56006855 |
ca |
56006856 |
T |
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Back To:
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