View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_low_140 (Length: 212)

Name: NF6641_low_140
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_low_140
NF6641_low_140
[»] chr5 (14 HSPs)
chr5 (13-160)||(14232516-14232663)
chr5 (13-81)||(14222674-14222742)
chr5 (83-160)||(557827-557905)
chr5 (83-160)||(562597-562675)
chr5 (83-160)||(12044016-12044094)
chr5 (83-160)||(36936395-36936473)
chr5 (83-160)||(41997774-41997852)
chr5 (83-160)||(32460429-32460507)
chr5 (83-160)||(36941149-36941227)
chr5 (83-160)||(42002565-42002643)
chr5 (83-160)||(3667004-3667081)
chr5 (83-194)||(21322923-21323033)
chr5 (83-160)||(24435066-24435142)
chr5 (86-126)||(34707183-34707223)
[»] chr1 (5 HSPs)
chr1 (83-160)||(3095220-3095298)
chr1 (83-194)||(23254091-23254202)
chr1 (93-140)||(8273071-8273118)
chr1 (78-159)||(41096832-41096912)
chr1 (84-160)||(17213032-17213108)
[»] chr7 (11 HSPs)
chr7 (83-160)||(9649846-9649923)
chr7 (93-160)||(23866854-23866921)
chr7 (83-160)||(13343313-13343390)
chr7 (83-140)||(47102682-47102740)
chr7 (81-160)||(13346247-13346326)
chr7 (83-158)||(40997729-40997804)
chr7 (83-160)||(10499013-10499090)
chr7 (83-160)||(10504042-10504119)
chr7 (83-160)||(27257351-27257427)
chr7 (83-160)||(40863962-40864038)
chr7 (83-160)||(40864283-40864359)
[»] chr4 (4 HSPs)
chr4 (83-160)||(13520871-13520948)
chr4 (94-160)||(31297421-31297488)
chr4 (83-160)||(7899840-7899916)
chr4 (83-147)||(39320702-39320766)
[»] chr8 (6 HSPs)
chr8 (93-160)||(43301638-43301706)
chr8 (78-160)||(31448744-31448827)
chr8 (83-160)||(4237226-4237304)
chr8 (83-160)||(4241965-4242043)
chr8 (83-160)||(8330264-8330340)
chr8 (83-160)||(37772850-37772926)
[»] scaffold0182 (1 HSPs)
scaffold0182 (83-160)||(8766-8844)
[»] chr3 (6 HSPs)
chr3 (83-160)||(8070808-8070886)
chr3 (83-160)||(3034775-3034853)
chr3 (83-160)||(3673697-3673775)
chr3 (83-160)||(8884302-8884380)
chr3 (83-160)||(8889048-8889126)
chr3 (83-160)||(3693751-3693829)
[»] scaffold0628 (2 HSPs)
scaffold0628 (83-160)||(5798-5875)
scaffold0628 (83-159)||(7567-7643)
[»] chr2 (4 HSPs)
chr2 (83-160)||(10159603-10159681)
chr2 (83-160)||(30659288-30659366)
chr2 (83-160)||(6296798-6296874)
chr2 (83-126)||(35602758-35602802)
[»] scaffold0045 (1 HSPs)
scaffold0045 (83-160)||(84040-84118)
[»] chr6 (3 HSPs)
chr6 (83-160)||(15509414-15509491)
chr6 (98-159)||(2881746-2881807)
chr6 (98-159)||(2862443-2862504)
[»] scaffold0008 (1 HSPs)
scaffold0008 (93-160)||(257768-257835)
[»] scaffold0070 (2 HSPs)
scaffold0070 (83-160)||(59539-59615)
scaffold0070 (83-160)||(63741-63817)
[»] scaffold0041 (1 HSPs)
scaffold0041 (83-160)||(34607-34683)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 14232516 - 14232663
Alignment:
Q  13 gagatgaagcaaggaaacaaggtctgatgacaagtaacggatcttttggtttcacctctgctaggaactattggaacaaatgtggaaattgagttaaaaa 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14232516 gagataaagcaaggaaacaaggtctgatgacaagtaacggatcttttggtttcacctctgctaggaactattggaacaaatgtggaaattgagttaaaaa 14232615  T
Q  113 actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  14232616 actaaacacaaatttccacattgggtagcactagtattgtgtgaattg 14232663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 14222674 - 14222742
Alignment:
Q  13 gagatgaagcaaggaaacaaggtctgatgacaagtaacggatcttttggtttcacctctgctaggaact 81  Q
    ||||| ||| |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  14222674 gagataaaggaagggaacaaggtctgatgagaagtaacggatcttttggtttcacctttgctaggaact 14222742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 557905 - 557827
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  557905 ttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 557827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 562675 - 562597
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  562675 ttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 562597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 12044016 - 12044094
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  12044016 ttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 12044094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 36936395 - 36936473
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||| | |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  36936395 ttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 36936473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 41997852 - 41997774
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||| ||||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  41997852 ttggaacatgtgtgaaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 41997774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 32460429 - 32460507
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  ||| |||||||||||||||| ||||| |||||||| |||| |||||||| |||||| ||||||||||||    
T  32460429 ttggaacatgtgttgaaattgagttaaaaagactaatcacaaattcccatgttgggtagaactagtgttgtgtgaattg 32460507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 36941149 - 36941227
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||| | |||||||||||||| |||| |||||||| |||||| || |||||||||    
T  36941149 ttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttctgtgaattg 36941227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 42002643 - 42002565
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||   || |||||||| |||||| ||||||||||||    
T  42002643 ttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcatatgttgggtagaactagtgttgtgtgaattg 42002565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 3667081 - 3667004
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||| |||| ||||||||||||||| ||| ||| |||| | |||| |||||| |||||    
T  3667081 ttggaacatgtgtggaaattgagtaaaaagactaaacacaaattttcatgttgtgtagaaatagtgttgtgtaaattg 3667004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 21322923 - 21323033
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattgnnnnnnntggaagtcccatatt 182  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| |||||| | ||||||||||       ||||||||||| ||     
T  21322923 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaagtggaagtcccacatc 21323021  T
Q  183 ggatagatcaca 194  Q
    |||| |||||||    
T  21323022 ggatggatcaca 21323033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 24435066 - 24435142
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| |||||| | ||||||||||    
T  24435066 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg 24435142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 34707183 - 34707223
Alignment:
Q  86 gaacaaatgtggaaattgagttaaaaaactaaacacaaatt 126  Q
    ||||| ||||| |||||||||||||| ||||||||||||||    
T  34707183 gaacatatgtgaaaattgagttaaaagactaaacacaaatt 34707223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 3095298 - 3095220
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaa-aaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  3095298 ttggaacatgtgtggaaattgagttaaacaaactaaacacaaatttccatgttgggtagaactagtgttgtgtgaattg 3095220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 23254091 - 23254202
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattgnnnnnnntggaagtcccatatt 182  Q
    ||||||||  ||| |||||| |||||||| | ||||||||||||||   ||||| ||  |||||| ||||||||||||       ||||||||||| |||    
T  23254091 ttggaacacgtgtcgaaatttagttaaaagagtaaacacaaatttcttcattggataaaactagtcttgtgtgaattgaaaagagtggaagtcccaaatt 23254190  T
Q  183 ggatagatcaca 194  Q
    ||||||||||||    
T  23254191 ggatagatcaca 23254202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 8273071 - 8273118
Alignment:
Q  93 tgtggaaattgagttaaaaaactaaacacaaatttccatattgggtag 140  Q
    ||||||||||||||||||||| |||||||||||| |||  ||||||||    
T  8273071 tgtggaaattgagttaaaaaaataaacacaaattcccacgttgggtag 8273118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 41096832 - 41096912
Alignment:
Q  78 aactattggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaatt 159  Q
    |||| |||||||| |||| |||||||||| ||   |||||||||||||||||| | ||||||| |||||| | |||||||||    
T  41096832 aactgttggaacatatgtagaaattgagt-aattgactaaacacaaatttccacaatgggtagaactagtgtagtgtgaatt 41096912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 17213032 - 17213108
Alignment:
Q  84 tggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||  |||| |||||||||||||| | || ||||||||||| || || ||||| || ||| ||||||||||||    
T  17213032 tggaacatgtgtgaaaattgagttaaaagattagacacaaatttctatcttaggtagaacaagtgttgtgtgaattg 17213108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 9649846 - 9649923
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  ||||||||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  9649846 ttggaacatgtgtggaaattgagttaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 9649923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 23866921 - 23866854
Alignment:
Q  93 tgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||| |||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  23866921 tgtgaaaattgagttaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 23866854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 13343313 - 13343390
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||| |||||| || |||||||||||| ||  |||||||| |||||| ||||||||||||    
T  13343313 ttggaacatgtgtggaaattgaattaaaagacaaaacacaaattttcacgttgggtagaactagtgttgtgtgaattg 13343390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 47102740 - 47102682
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtag 140  Q
    ||||||||  |||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  47102740 ttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtag 47102682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 13346247 - 13346326
Alignment:
Q  81 tattggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||||  |||||||||||| |||||| || ||||| |||||| ||  || ||||| |||||| ||||||||||||    
T  13346247 tattggaacatgtgtggaaattgaattaaaagacaaaacataaattttcacgtttggtagaactagtgttgtgtgaattg 13346326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 40997729 - 40997804
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaat 158  Q
    ||||||||| ||| ||||||||||||||| |||||| ||||||| | | ||||||||  |||||| | ||||||||    
T  40997729 ttggaacaagtgtagaaattgagttaaaagactaaatacaaattcctacattgggtaaaactagtgtagtgtgaat 40997804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 10499013 - 10499090
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||| |||||| |||||||| ||||||| |  |  ||||| |||||| ||||||||||||    
T  10499013 ttggaacatgtgtggaaattgaattaaaagactaaacataaatttcaacgtaaggtagaactagtgttgtgtgaattg 10499090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 10504042 - 10504119
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||| |||||| |||||||| ||||||| |  |  ||||| |||||| ||||||||||||    
T  10504042 ttggaacatgtgtggaaattgaattaaaagactaaacataaatttcaacgtaaggtagaactagtgttgtgtgaattg 10504119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 27257427 - 27257351
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| |||||| | ||||||||||    
T  27257427 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg 27257351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 40863962 - 40864038
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| |||||| | ||||||||||    
T  40863962 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg 40864038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 40864283 - 40864359
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| |||||| | ||||||||||    
T  40864283 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg 40864359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 13520871 - 13520948
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  ||||||||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  13520871 ttggaacatgtgtggaaattgagttaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 13520948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 31297421 - 31297488
Alignment:
Q  94 gtggaaattgagttaaaaaa-ctaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||||||| |||||  |||||||||||||  ||| |||||||| |||||| ||||||||||||    
T  31297421 gtggaaattgagtaaaaaaggctaaacacaaattctcatgttgggtagaactagtgttgtgtgaattg 31297488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 7899840 - 7899916
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| |||||| | ||||||||||    
T  7899840 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagtgtggtgtgaattg 7899916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 39320766 - 39320702
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagt 147  Q
    ||||||||  ||||||||||||||||||| | |||| |||||||  ||| |||||||| ||||||    
T  39320766 ttggaacatgtgtggaaattgagttaaaagattaaatacaaattcgcatgttgggtagaactagt 39320702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 43301638 - 43301706
Alignment:
Q  93 tgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  43301638 tgtggaaattgagttaaaaagactaaacacaaatttccatcttgggtagaactagtgttgtgtgaattg 43301706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 31448744 - 31448827
Alignment:
Q  78 aactattggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||| ||||||||  |||||||||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  31448744 aactgttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 31448827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 4237226 - 4237304
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||| | |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  4237226 ttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 4237304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 4241965 - 4242043
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||| | |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  4241965 ttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 4242043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 8330264 - 8330340
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| ||||| || ||||||||||    
T  8330264 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagcatagtgtgaattg 8330340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 37772926 - 37772850
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| |||||| | ||||||||||    
T  37772926 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg 37772850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 8766 - 8844
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  8766 ttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 8844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 8070886 - 8070808
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  8070886 ttggaacatgtgtggaaattgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 8070808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 3034853 - 3034775
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||| | |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  3034853 ttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 3034775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 3673775 - 3673697
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||| | |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  3673775 ttggaacatgtgtggaaattgagttaaacagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 3673697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 8884380 - 8884302
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||| ||||||||||| |||||||||||||| |||| |||||||| |||||| ||||||||||||    
T  8884380 ttggaacatgtgtggaaactgagttaaaaagactaaacacaaattcccatgttgggtagaactagtgttgtgtgaattg 8884302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 8889126 - 8889048
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||| ||||||||||| |||||||||||||| |||| |||||||| | |||| ||||||||||||    
T  8889126 ttggaacatgtgtggaaactgagttaaaaagactaaacacaaattcccatgttgggtagaattagtgttgtgtgaattg 8889048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 3693829 - 3693751
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||| | ||||||||||||||  ||| |||||||| |||| | ||||||||||||    
T  3693829 ttggaacatgtgtggaaattgagttaaacagactaaacacaaattctcatgttgggtagaactaatgttgtgtgaattg 3693751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 5875 - 5798
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||  |||||| ||||| |||||| ||||||||||||    
T  5875 ttggaacatgtgtggaaattgagttaaaatactaaacacaaattctcatatttggtagaactagtgttgtgtgaattg 5798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 7643 - 7567
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaatt 159  Q
    ||||||||  ||||||||||||||||||  |  |||||||||||  | | || ||||| ||||||||||||||||||    
T  7643 ttggaacatgtgtggaaattgagttaaagtaggaaacacaaattctcttgtttggtagaactagtattgtgtgaatt 7567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 10159603 - 10159681
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||||| |||||||||||||| |||| || ||||| |||||| ||||||||||||    
T  10159603 ttggaacatctgtggaaattgagttaaaaagactaaacacaaattcccatgttaggtagaactagtgttgtgtgaattg 10159681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 30659366 - 30659288
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||||||||||| |||||||| ||| | |||| |||||||| |||||| ||||||||||||    
T  30659366 ttggaacatgtgtggaaattgagttaaaaagactaaacaaaaactcccatgttgggtagaactagtgttgtgtgaattg 30659288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 6296798 - 6296874
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| |||||| | ||||||||||    
T  6296798 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg 6296874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 35602802 - 35602758
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatt 126  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||    
T  35602802 ttggaacatgtgtggaaattgagttaaaaagactaaacacaaatt 35602758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 84118 - 84040
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaa-actaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||  |||||||||||  ||||||| |||||||||||||||| || |||||||| |||||| ||||||||||||    
T  84118 ttggaacatgtgtggaaattggattaaaaagactaaacacaaatttctatgttgggtagaactagtgttgtgtgaattg 84040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 15509491 - 15509414
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||| ||||| |||||||| ||||||||||||||||  | ||| |||| ||||||||| |||||||||    
T  15509491 ttggaacatatgtgaaaattaagttaaaagactaaacacaaatttctctgttgagtagaactagtattatgtgaattg 15509414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 2881746 - 2881807
Alignment:
Q  98 aaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaatt 159  Q
    ||||||||||||||||||| |||||||||  || ||| ||||| |||||| |||||||||||    
T  2881746 aaattgagttaaaaaactagacacaaattctcacatttggtagaactagtgttgtgtgaatt 2881807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 2862443 - 2862504
Alignment:
Q  98 aaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaatt 159  Q
    ||||||||||||||||||| |||||||||  || ||| ||||| | |||| |||||||||||    
T  2862443 aaattgagttaaaaaactagacacaaattctcacatttggtagaattagtgttgtgtgaatt 2862504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 257835 - 257768
Alignment:
Q  93 tgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    ||||||||||||||||||| ||||||||||||||   || ||| |||| |||| | ||||||||||||    
T  257835 tgtggaaattgagttaaaagactaaacacaaattcttatgttgagtagaactaatgttgtgtgaattg 257768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 59615 - 59539
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| |||||| | ||||||||||    
T  59615 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg 59539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 63817 - 63741
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| |||||| | ||||||||||    
T  63817 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg 63741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 34607 - 34683
Alignment:
Q  83 ttggaacaaatgtggaaattgagttaaaaaactaaacacaaatttccatattgggtagtactagtattgtgtgaattg 160  Q
    |||||||| ||||||||||||||| ||   |||||||||||||| ||| | ||||||| |||||| | ||||||||||    
T  34607 ttggaacatatgtggaaattgagt-aattgactaaacacaaattcccacaatgggtagaactagtgtagtgtgaattg 34683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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