View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_144 (Length: 204)
Name: NF6641_low_144
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_144 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 15913271 - 15913096
Alignment:
| Q |
15 |
gaatatcctcctcgtatgaaaggggtcgatctggtacaccttctctaacactgacactatgaaaatctgaggatgacatagctacaagcatcactttgca |
114 |
Q |
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| T |
15913271 |
gaatatcctcctcgtatgaaaggggtcgatctggtacaccttctctaacactgacactatgaaaatctgaggatgacatagctacaagcatcactttgca |
15913172 |
T |
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| Q |
115 |
ataatcttttaatttcccaactgtcaagtatcccccggaataagcgtaaacatggcttttggagtccgagctgatg |
190 |
Q |
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| T |
15913171 |
ataatcttttaatttcccaactgtcaagtatcccccggcataagcgtaaacatggcttttggagtccgagctgatg |
15913096 |
T |
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Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 9358841 - 9358955
Alignment:
| Q |
23 |
tcctcgtatgaaaggggtcgatctggtacaccttctctaacactgacactatgaaaatctgaggatgacatagctacaagcatcactttgcaataatctt |
122 |
Q |
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| T |
9358841 |
tcctggtatgaaagtgatcgatctggtacaccttctctgactctgacattaggaaaatctgaagatgacatagcaacaagcttcacttggcaataatctt |
9358940 |
T |
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| Q |
123 |
ttaatttcccaactg |
137 |
Q |
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| T |
9358941 |
ttaatctcccaactg |
9358955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 9335124 - 9335235
Alignment:
| Q |
23 |
tcctcgtatgaaaggggtcgatctggtacaccttctctaacactgacactatgaaaatctgaggatgacatagctacaagcatcactttgcaataatctt |
122 |
Q |
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| T |
9335124 |
tcctggtatgaaagtgatcgatctggtacaccttctctgactctgacattaggaaaat---aagatgacatagcaacaagcttcacttggcaataatctt |
9335220 |
T |
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| Q |
123 |
ttaatttcccaactg |
137 |
Q |
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||||| ||||||||| |
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| T |
9335221 |
ttaatctcccaactg |
9335235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 9245555 - 9245456
Alignment:
| Q |
39 |
gtcgatctggtacaccttctctaac------actgacactatgaaaatctgaggatgacatagctacaagcatcactttgcaataatcttttaatttccc |
132 |
Q |
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|||||||||||||||||||||| || |||| ||||| |||||||||| ||||||||||| |||||| |||||| |||||| ||||||||| |||| |
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| T |
9245555 |
gtcgatctggtacaccttctctgaccttggcactgtcactaggaaaatctgaagatgacatagcaacaagcttcacttggcaatagtcttttaatctccc |
9245456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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