View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_145 (Length: 204)
Name: NF6641_low_145
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_145 |
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Alignment Details
Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 40115794 - 40115734
Alignment:
| Q |
21 |
aaggttagttaccactctagttagaggactataaaatataaatatgtcacttcattgtatc |
81 |
Q |
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| T |
40115794 |
aaggttaattaccactctagttagaggactataaaatataaatatgtcacttcattgtatc |
40115734 |
T |
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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 40115675 - 40115619
Alignment:
| Q |
138 |
cctcatcaatacatatatgttctctatcttatttacatctatgatctttgtcctatg |
194 |
Q |
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|||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| |
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| T |
40115675 |
cctcatcaatacatatttgttctctatcatgtttacatctatgatctttgtcctatg |
40115619 |
T |
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