View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_146 (Length: 203)
Name: NF6641_low_146
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_146 |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 41453413 - 41453267
Alignment:
| Q |
40 |
ttaacaatgattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattac |
139 |
Q |
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| T |
41453413 |
ttaacaatgattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattac |
41453314 |
T |
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| Q |
140 |
aagctatttagtataaagaataccaaactcacccggcaaatgctttt |
186 |
Q |
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| T |
41453313 |
aagctatttagtataaagaataccaaactcacctggcaaatgctttt |
41453267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 41442146 - 41442002
Alignment:
| Q |
42 |
aacaatgattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtg--atatgacatcgaaaatattac |
139 |
Q |
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| T |
41442146 |
aacaatgattgaatacaacccatatagtaaagtccattggctcgaaaaggtaaatcgaattctaaatgtgatatgagtcatatgacattgaagatattac |
41442047 |
T |
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| Q |
140 |
aagctatttagtataaagaataccaaactcacccggcaaatgctt |
184 |
Q |
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| T |
41442046 |
aagctattttgtgtcacgaatactaaactcacccggcaaatgctt |
41442002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 184
Target Start/End: Complemental strand, 41426164 - 41426020
Alignment:
| Q |
40 |
ttaacaatgattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattac |
139 |
Q |
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| T |
41426164 |
ttaacaatgattggatataccctatacgttaaagtccatcagctcgaaaaaggaaaattgatactaaatgtgatatgtgatattacatggaaaaaatttc |
41426065 |
T |
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| Q |
140 |
aagctatttagtataaagaataccaaactcacccggcaaatgctt |
184 |
Q |
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|||| |||||||| |||||| | ||||||||||||||| ||||| |
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| T |
41426064 |
aagcaatttagtaacaagaatgctaaactcacccggcaagtgctt |
41426020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 41431496 - 41431446
Alignment:
| Q |
133 |
atattacaagctatttagtataaagaataccaaactcacccggcaaatgct |
183 |
Q |
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| T |
41431496 |
atattacaagctatttagtatcaggaatactaaactcgcctggcaaatgct |
41431446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 33369842 - 33369699
Alignment:
| Q |
40 |
ttaacaatgattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattac |
139 |
Q |
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||||||| |||||||||||||||||||||| |||||| | | ||| ||||||||||||| ||| ||| ||||| ||| ||||| ||| ||||||||||| |
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| T |
33369842 |
ttaacaacgattggatacaacccatatggttaagtccgtcagctcgaaaaagtaaattggatagtaaatgtgatctgtaatatggcatggaaaatattac |
33369743 |
T |
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| Q |
140 |
aagctatttagtataaagaataccaaactcacccggcaaatgct |
183 |
Q |
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| T |
33369742 |
aagctatttagcaacaagaatactaaactcgcccggaaaatgct |
33369699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 33363364 - 33363268
Alignment:
| Q |
87 |
aaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattacaagctatttagtataaagaataccaaactcacccggcaaatgct |
183 |
Q |
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|||| ||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |
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| T |
33363364 |
aaaattaaattgaatactaaatgtgataggcaatatgacattgaaaatattacaagctatttagtatcaggaatactaaactcacccggcaaatgct |
33363268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 7763254 - 7763389
Alignment:
| Q |
48 |
gattggatacaacccatatggtgaagtccataacctcaaaaaagtaaattgaatactaatcgtgatatgtgatatgacatcgaaaatattacaagctatt |
147 |
Q |
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|||||||| ||||||||||||| |||||||| | || ||||| | |||||| |||||| ||||| ||||||||||||| ||||||| |||||| |||| |
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| T |
7763254 |
gattggatgcaacccatatggtaaagtccatcagctgaaaaa-gaaaattggatactacgtgtgatgtgtgatatgacatggaaaatagtacaagatatt |
7763352 |
T |
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| Q |
148 |
tagtataaagaataccaaactcacccggcaaatgctt |
184 |
Q |
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| |||| |||||||| | ||||||||||||||||||| |
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| T |
7763353 |
tcgtatcaagaatactagactcacccggcaaatgctt |
7763389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 5580 - 5517
Alignment:
| Q |
114 |
atgtgatatgacatcgaaaatattacaagctatttagtataaagaataccaaactcacccggca |
177 |
Q |
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| T |
5580 |
atgtgatatgacatggaaaaaatttcaagcaatttagtaacaagaatgctaaactcacccggca |
5517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 17878 - 17941
Alignment:
| Q |
114 |
atgtgatatgacatcgaaaatattacaagctatttagtataaagaataccaaactcacccggca |
177 |
Q |
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|||||||||||||| ||||| ||| ||||| |||||||| |||||| | |||||||||||||| |
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| T |
17878 |
atgtgatatgacatggaaaaaatttcaagcaatttagtaacaagaatgctaaactcacccggca |
17941 |
T |
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