View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_low_16 (Length: 572)

Name: NF6641_low_16
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_low_16
NF6641_low_16
[»] chr7 (6 HSPs)
chr7 (180-448)||(37616794-37617062)
chr7 (180-448)||(36828785-36829052)
chr7 (180-439)||(4554599-4554857)
chr7 (173-416)||(4968051-4968304)
chr7 (174-407)||(43282624-43282867)
chr7 (275-341)||(18713225-18713292)
[»] scaffold0044 (1 HSPs)
scaffold0044 (182-448)||(82914-83179)
[»] chr1 (9 HSPs)
chr1 (246-448)||(8113781-8113983)
chr1 (170-420)||(24765181-24765441)
chr1 (180-416)||(47974931-47975166)
chr1 (21-126)||(6854236-6854341)
chr1 (175-295)||(23894570-23894690)
chr1 (221-332)||(125284-125395)
chr1 (174-283)||(20010614-20010722)
chr1 (219-341)||(325836-325959)
chr1 (117-176)||(6865260-6865319)
[»] chr8 (2 HSPs)
chr8 (180-416)||(10289539-10289774)
chr8 (174-416)||(43266157-43266398)
[»] chr5 (3 HSPs)
chr5 (181-402)||(35228096-35228317)
chr5 (180-416)||(33672110-33672346)
chr5 (212-294)||(21286114-21286196)
[»] chr2 (5 HSPs)
chr2 (173-416)||(1658619-1658861)
chr2 (180-298)||(22710220-22710338)
chr2 (180-294)||(38432075-38432187)
chr2 (275-335)||(8148771-8148831)
chr2 (275-335)||(8153395-8153455)
[»] chr3 (6 HSPs)
chr3 (174-416)||(48663868-48664109)
chr3 (180-416)||(4100585-4100831)
chr3 (175-337)||(2994023-2994174)
chr3 (253-416)||(28160476-28160639)
chr3 (219-341)||(16900498-16900621)
chr3 (180-214)||(28160439-28160473)
[»] chr4 (3 HSPs)
chr4 (219-341)||(11057097-11057220)
chr4 (174-216)||(7199057-7199099)
chr4 (180-216)||(51470337-51470373)
[»] chr6 (1 HSPs)
chr6 (251-341)||(5319534-5319625)
[»] scaffold0101 (1 HSPs)
scaffold0101 (180-216)||(18548-18584)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 180 - 448
Target Start/End: Original strand, 37616794 - 37617062
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaat 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||     
T  37616794 tgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgtgttagggaaaagcggtccaaaac 37616893  T
Q  280 cgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgt 379  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616894 cgggtttcgcggccgctttacgtggagcggtagcgggtcaaatcgcccacttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgt 37616993  T
Q  380 tagaagggttaattttgtcattttcaaagccctattttctttcatccattccatcgtagaacacagccg 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616994 tagaagggttaattttgtcattttcaaagccctattttctttcatccattccatcgtagaacacagccg 37617062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 180 - 448
Target Start/End: Complemental strand, 36829052 - 36828785
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaat 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||     
T  36829052 tgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagatcgcgaccgcatcgcgcgttagggaaaagcggtccaaaac 36828953  T
Q  280 cgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgt 379  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  36828952 cgggtttcgcggccgctttacatggagcggtagcgggtcaaatcgcccgcttttccaggtcg-aacgaaattacgaaattatccctcacttaagtaacgt 36828854  T
Q  380 tagaagggttaattttgtcattttcaaagccctattttctttcatccattccatcgtagaacacagccg 448  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36828853 tagaagggttaattttgtcattttcaaagtcctattttctttcatccattccatcgtagaacacagccg 36828785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 180 - 439
Target Start/End: Complemental strand, 4554857 - 4554599
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaat 279  Q
    ||||||||||||||  | || ||||||||||||||||||||||||||||||| ||| ||||||||||||  ||||||||| || ||||||||  |||||     
T  4554857 tgttgtcaatagcgttcaaatgcggcgcgatcgcggctgaaaacagcctagc-cgtcagaacgcgaccgagtcgcgcgttaggcaaaagcggaacaaaac 4554759  T
Q  280 cgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgt 379  Q
    ||||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  4554758 cgggtttcgcggccgctttacatggagtggtagcgggtcaaatcacccgcttttccggttcgaaacgaaattatggaattatccctcacttaagtaacgt 4554659  T
Q  380 tagaagggttaattttgtcattttcaaagccctattttctttcatccattccatcgtaga 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4554658 tagaagggttaattttgtcattttcaaagccctattttctttcatccattccatcgtaga 4554599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 173 - 416
Target Start/End: Original strand, 4968051 - 4968304
Alignment:
Q  173 aaacctttgttgtcaatagcggcctaacgcggcgcgatcgcgg----------ctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgg 262  Q
    |||||| ||||||||||||||||||||||||||||||||||||          |||||||||||||||||| | ||||||||||||||||||||||| ||    
T  4968051 aaacctctgttgtcaatagcggcctaacgcggcgcgatcgcggcgcggagcggctgaaaacagcctagcgcatcagaacgcgaccgcatcgcgcgttagg 4968150  T
Q  263 gaaaagcggtccaaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgc-ccgcttttccgggtcgaaacgaaattacgaaattat 361  Q
     ||||||||   |||| ||||||||||||||||||| ||| |||| | |||||||| || |||  ||| ||||||||||||| |||||||||  |||||     
T  4968151 caaaagcggctgaaaaccgggtttcgcggccgcttttcgtggagctggagcgggtctaa-cgcggcgcgtttccgggtcgaagcgaaattacagaattac 4968249  T
Q  362 ccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattt 416  Q
    ||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||    
T  4968250 ccctcacttaagtgacattagaagggttaattttgtaattttcaaaaccctattt 4968304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 174 - 407
Target Start/End: Original strand, 43282624 - 43282867
Alignment:
Q  174 aacctttgttgtcaatagcggcctaacgcggcgcgatcgcgg----------ctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcggg 263  Q
    ||||| ||||||||||||||||||||||||||||||||||||          |||||||||||||||||||| ||||||||||||||||||||||| ||     
T  43282624 aacctctgttgtcaatagcggcctaacgcggcgcgatcgcggcgcggagcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggc 43282723  T
Q  264 aaaagcggtccaaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgc-ccgcttttccgggtcgaaacgaaattacgaaattatc 362  Q
    ||||||||   |||| ||||||||||||| ||||| ||| |||||| |||||||| || |||  ||| ||||||||||||| |||||||||  ||||| |    
T  43282724 aaaagcggctgaaaaccgggtttcgcggctgcttttcgtggagcgggagcgggtctaa-cgcggcgcgtttccgggtcgaagcgaaattacagaattacc 43282822  T
Q  363 cctcacttaagtaacgttagaagggttaattttgtcattttcaaa 407  Q
    |||||||||||| || ||||||||||||||||||| |||||||||    
T  43282823 cctcacttaagtgacattagaagggttaattttgtaattttcaaa 43282867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 18713292 - 18713225
Alignment:
Q  275 aaaatcgggtttcgcggccgc-tttacgtagagcggtagcgggtcaaatcgcccgcttttccgggtcg 341  Q
    |||| |||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||    
T  18713292 aaaagcgggtttcgcggccgcctttacctggagcgggagcgggtcaaatcgcccgcttttccgggtcg 18713225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 182 - 448
Target Start/End: Original strand, 82914 - 83179
Alignment:
Q  182 ttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaatcg 281  Q
    |||||||||||||||||||||||| ||   ||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||    
T  82914 ttgtcaatagcggcctaacgcggctcgga-gcggcggaaaacagcctagcgcgttagaacgcgaccacatcgcgcgttagggaaaagcggtccaaaaccg 83012  T
Q  282 ggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgtta 381  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  83013 ggtttcgcgggcgctttacgtggagcggtagcgggtcaaatcgcccgcttttccgggtcgaaacgaaataacgaaattatccctcacttaagtaacgtta 83112  T
Q  382 gaagggttaattttgtcattttcaaagccctattttctttcatccattccatcgtagaacacagccg 448  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  83113 gaagggttaattttgtcattttcaaaaccctattttctttcatccattccatcgtagaacacagccg 83179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 246 - 448
Target Start/End: Original strand, 8113781 - 8113983
Alignment:
Q  246 ccgcatcgcgcgttcgggaaaagcggtccaaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcccgcttttccgggtcgaaac 345  Q
    |||||||||||||| ||||||| ||||||||||  |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||    
T  8113781 ccgcatcgcgcgttagggaaaaacggtccaaaactgggtttcgcggccgctttacatggagcggtagcgggtcaaatcgcccgcttttccggatcgaaac 8113880  T
Q  346 gaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattttctttcatccattccatcgtagaacacag 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8113881 gaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattttctttcatccattccattgtagaacacag 8113980  T
Q  446 ccg 448  Q
    |||    
T  8113981 ccg 8113983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 170 - 420
Target Start/End: Original strand, 24765181 - 24765441
Alignment:
Q  170 tccaaacctttgttgtcaatagcggcctaacgcggcgcgatcgcgg----------ctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgtt 259  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||| ||||||||    
T  24765181 tccaaacctctgttgtcaatagcggcctaacgcggcgcgatcgcggcgcggagcggctgaaaacagcctagcgcgttagaacgcgaccgcaacgcgcgtt 24765280  T
Q  260 cgggaaaagcggtccaaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcccgcttttccgggtcgaaacgaaattacgaaatt 359  Q
     || |||||||| || ||| ||| ||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  24765281 aggcaaaagcggacctaaaccggttttcgtggccgcttttcctggagcggtagcgggtcaaatcgcccgcttttccgggtcgaccaaaaattacgaaatt 24765380  T
Q  360 atccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattttctt 420  Q
      ||||||||||||| || |||| |||||||||||||| |||||| || ||||||||||||    
T  24765381 gcccctcacttaagtgacattagtagggttaattttgtaattttccaaaccctattttctt 24765441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 180 - 416
Target Start/End: Complemental strand, 47975166 - 47974931
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaat 279  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||   ||||     
T  47975166 tgttgtcaatagcggcctaacgcggcgcgga-gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaac 47975068  T
Q  280 cgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgc-ccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacg 378  Q
    ||||||||||||||||||| ||| |||||| |||||||| || |||  ||| ||||||||||||| |||||||||  ||||| ||||||||||||| ||     
T  47975067 cgggtttcgcggccgcttttcgtggagcgggagcgggtctaa-cgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgaca 47974969  T
Q  379 ttagaagggttaattttgtcattttcaaagccctattt 416  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  47974968 ttagaagggttaattttgtaattttcaaagccctattt 47974931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 6854236 - 6854341
Alignment:
Q  21 actgtctcatcttttgaattttgaagaatattcctatatcgatgttaaatgttaatgaaacatgtttctgaatttttctgggaataacattcttatacat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6854236 actgtctcatcttttgaattttgaagaatattcctatatcgatgttaaatgttaatgaaacatgtttctgaatttttctgggaataacattcttatacat 6854335  T
Q  121 agtatt 126  Q
    ||||||    
T  6854336 agtatt 6854341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 175 - 295
Target Start/End: Complemental strand, 23894690 - 23894570
Alignment:
Q  175 acctttgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtcc 274  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |  || |||||| || ||||||||  |    
T  23894690 acctctgttgtcaatagcggcctaatgtggcgcgatcgcggctgaaaacagcctagcgcgtcagaacgcgactgagtcacgcgttaggcaaaagcggaac 23894591  T
Q  275 aaaatcgggtttcgcggccgc 295  Q
     ||| ||||||||||||||||    
T  23894590 gaaaccgggtttcgcggccgc 23894570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 125284 - 125395
Alignment:
Q  221 aacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaa 320  Q
    ||||||||||||||| ||||| ||||||  ||| ||||| || ||||||||  ||||| ||||||||||||||||||||| | |||||||||||||||||    
T  125284 aacagcctagcgcgtcagaactcgaccgagtcgtgcgttaggcaaaagcggaacaaaaccgggtttcgcggccgctttacatggagcggtagcgggtcaa 125383  T
Q  321 atcgcccgcttt 332  Q
    | || |||||||    
T  125384 agcggccgcttt 125395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 174 - 283
Target Start/End: Complemental strand, 20010722 - 20010614
Alignment:
Q  174 aacctttgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtc 273  Q
    ||||| |||||||||| |||| |||||||||||||   |||||||||||||||||||||||||||||||||||||  ||||||||| || |||||||  |    
T  20010722 aacctctgttgtcaattgcgggctaacgcggcgcgga-gcggctgaaaacagcctagcgcgttagaacgcgaccgagtcgcgcgttaggcaaaagcgcac 20010624  T
Q  274 caaaatcggg 283  Q
    ||||| ||||    
T  20010623 caaaaccggg 20010614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 325959 - 325836
Alignment:
Q  219 aaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaatcgggtttcgcggccgc-tttacgtagagcggtagcgggt 317  Q
    ||||||||||| ||||| ||| |||  |||  ||||||||| |||||||||||  ||| | |||||||||||||||| ||||| | |||||| |||||||    
T  325959 aaaacagcctaccgcgtcagagcgcacccgattcgcgcgttagggaaaagcgggtcaatagcgggtttcgcggccgcctttacctggagcgggagcgggt 325860  T
Q  318 caaatcgcccgcttttccgggtcg 341  Q
    ||||||||| ||||||||||||||    
T  325859 caaatcgcctgcttttccgggtcg 325836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 6865260 - 6865319
Alignment:
Q  117 acatagtattttcaagaatataatgcatggtagtatatagtgaaattaacacctccaaac 176  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6865260 acatagtatttccaagaatataatgcatggtagtatatattgaaattaacacctccaaac 6865319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 5e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 180 - 416
Target Start/End: Original strand, 10289539 - 10289774
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaat 279  Q
    ||||||||||||||| ||||| |||||||   |||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||     
T  10289539 tgttgtcaatagcggtctaacacggcgcgga-gcggttgaaaacagcctagcgcgttagaacgcgaccgcaacgcgcgttaggcaaaagcggtcctaaac 10289637  T
Q  280 cgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgt 379  Q
    ||||||| ||||||||||| | | |||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| || |    
T  10289638 cgggttttgcggccgcttttcatggagcgggagcgggtcaaatcgcccgcttttccgggtcgaaacaaaattacaaaattacccctcacttaagtgacat 10289737  T
Q  380 tagaagggttaattttgtcattttcaaagccctattt 416  Q
    |||||||||||||||||| ||||||||||||||||||    
T  10289738 tagaagggttaattttgtaattttcaaagccctattt 10289774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 174 - 416
Target Start/End: Complemental strand, 43266398 - 43266157
Alignment:
Q  174 aacctttgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtc 273  Q
    ||||| |||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||      
T  43266398 aacctctgttgtcaatagcggcctaacgcggcgcgga-gcggctgaaaacagcctagcgcgtcagaacacgaccgcatcgcgcgttaggcaaaagcggct 43266300  T
Q  274 caaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgc-ccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaa 372  Q
     |||| ||||||||||||||||||| ||| |||||| || ||||| || |||  ||| ||| ||||||||| |||||||||  ||||| |||||||||||    
T  43266299 gaaaaccgggtttcgcggccgcttttcgtggagcgggagtgggtctaa-cgcggcgcgttttcgggtcgaagcgaaattacagaattacccctcacttaa 43266201  T
Q  373 gtaacgttagaagggttaattttgtcattttcaaagccctattt 416  Q
    || || ||||||||||||||||||| ||||||||||||||||||    
T  43266200 gtgacattagaagggttaattttgtaattttcaaagccctattt 43266157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 7e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 181 - 402
Target Start/End: Complemental strand, 35228317 - 35228096
Alignment:
Q  181 gttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaatc 280  Q
    |||||||||||||  | |||||||||||||||||||||||||||||||||||||| ||||||||| ||  |||||| ||  | ||||||||  ||||| |    
T  35228317 gttgtcaatagcgatcaaacgcggcgcgatcgcggctgaaaacagcctagcgcgtcagaacgcgatcgagtcgcgcattaagcaaaagcggaacaaaacc 35228218  T
Q  281 gggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgtt 380  Q
    ||||||||| |||||||||| | |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  35228217 gggtttcgcagccgctttacatggagcggtagctggtcaagtcgcccgcttttccgggtcgaaacgaaattacggaattatccctcacttatgtaacgtt 35228118  T
Q  381 agaagggttaattttgtcattt 402  Q
    ||||||||||||||||||||||    
T  35228117 agaagggttaattttgtcattt 35228096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 180 - 416
Target Start/End: Original strand, 33672110 - 33672346
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaat 279  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||   ||||     
T  33672110 tgttgtcagtagcggcctaacgcggcgcgatcgctgctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaac 33672209  T
Q  280 cgggtttcgcggccgctttacg-tagagcggtagcgggtcaaatcgc-ccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaac 377  Q
    |||||||||||||||||||  | |||||||| || ||||| || |||  ||| ||||||||| ||| |||||||||  ||||| ||||||| ||||| ||    
T  33672210 cgggtttcgcggccgctttttgttagagcgggagtgggtctaa-cgcggcgcgtttccgggttgaagcgaaattacataattacccctcac-taagtgac 33672307  T
Q  378 gttagaagggttaattttgtcattttcaaagccctattt 416  Q
     ||||||||||||||||||| ||||||||||||||||||    
T  33672308 attagaagggttaattttgtaattttcaaagccctattt 33672346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 21286196 - 21286114
Alignment:
Q  212 gcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaatcgggtttcgcggccg 294  Q
    |||||||||||||||||||||||| | ||||||||||  ||||||||| || ||||||||  | ||| |||||||||||||||    
T  21286196 gcggctgaaaacagcctagcgcgtcaaaacgcgaccgagtcgcgcgttaggcaaaagcggaacgaaaccgggtttcgcggccg 21286114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 2e-66; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 173 - 416
Target Start/End: Original strand, 1658619 - 1658861
Alignment:
Q  173 aaacctttgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggt 272  Q
    |||||| |||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||     
T  1658619 aaacctctgttgtcaatagcggcctaacgcggcgcgga-gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggc 1658717  T
Q  273 ccaaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgc-ccgcttttccgggtcgaaacgaaattacgaaattatccctcactta 371  Q
      |||| ||||||||||||||||||| ||| |||||| |||||||| || |||  ||| ||||||||||||| |||||||||  ||||| ||||||||||    
T  1658718 tgaaaaccgggtttcgcggccgcttttcgtggagcgggagcgggtctaa-cgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcactta 1658816  T
Q  372 agtaacgttagaagggttaattttgtcattttcaaagccctattt 416  Q
    ||| || ||||||||||||||||||| ||||||||||||||||||    
T  1658817 agtgacattagaagggttaattttgtaattttcaaagccctattt 1658861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 22710220 - 22710338
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaat 279  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| || || ||||| | ||||     
T  22710220 tgttgtcaatagcggcttaacgcggcacgatcgcggctgaaaacagcctagcgcgtcagaacgcgaccgcaacgcgcgttaggcaatagcgggcgaaaac 22710319  T
Q  280 cgggtttcgcggccgcttt 298  Q
    |||||||||||||||||||    
T  22710320 cgggtttcgcggccgcttt 22710338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 294
Target Start/End: Original strand, 38432075 - 38432187
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaat 279  Q
    ||||||||||| ||| |||||||||||||   |||||||||||||||||||||||| ||||||||||||  ||||||||| |  ||||||||  |||||     
T  38432075 tgttgtcaata-cgggctaacgcggcgcgga-gcggctgaaaacagcctagcgcgtcagaacgcgaccgagtcgcgcgttagacaaaagcggaacaaaac 38432172  T
Q  280 cgggtttcgcggccg 294  Q
     ||||||||||||||    
T  38432173 ggggtttcgcggccg 38432187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 8148771 - 8148831
Alignment:
Q  275 aaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcccgcttttcc 335  Q
    |||| ||| ||||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  8148771 aaaagcggatttcgcggccgctttacatggagcggtagcgggtcaaatcgcccacttttcc 8148831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 8153395 - 8153455
Alignment:
Q  275 aaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcccgcttttcc 335  Q
    |||| ||| ||||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  8153395 aaaagcggatttcgcggccgctttacatggagcggtagcgggtcaaatcgcccacttttcc 8153455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 7e-66; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 174 - 416
Target Start/End: Complemental strand, 48664109 - 48663868
Alignment:
Q  174 aacctttgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtc 273  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||      
T  48664109 aacctctgttgtcaatagcggcctaacgcggcgcgaa-gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggct 48664011  T
Q  274 caaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgc-ccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaa 372  Q
     |||| ||||||||||||||||||| ||| |||||| |||||||| || |||  ||| ||||||||||||| |||||||||  ||||| |||||||||||    
T  48664010 gaaaaccgggtttcgcggccgcttttcgtggagcgggagcgggtctaa-cgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaa 48663912  T
Q  373 gtaacgttagaagggttaattttgtcattttcaaagccctattt 416  Q
    || || ||||||||||||||||||| ||||||||| ||||||||    
T  48663911 gtgacattagaagggttaattttgtaattttcaaaaccctattt 48663868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 180 - 416
Target Start/End: Original strand, 4100585 - 4100831
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcgg----------ctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagc 269  Q
    ||||||||||||||||||||||||||||||||||||          |||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  4100585 tgttgtcaatagcggcctaacgcggcgcgatcgcggcgcggagcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagc 4100684  T
Q  270 ggtccaaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgc-ccgcttttccgggtcgaaacgaaattacgaaattatccctcac 368  Q
     |   |||| ||||||||||||||||||| ||| |||||| |||||||| || |||  ||| ||||||||||||| |||||||||  ||||| |||||||    
T  4100685 agctgaaaaccgggtttcgcggccgcttttcgtggagcgggagcgggtctaa-cgcggcgcgtttccgggtcgaagcgaaattacagaattacccctcac 4100783  T
Q  369 ttaagtaacgttagaagggttaattttgtcattttcaaagccctattt 416  Q
    |||||| || |||||||| |||||||||| ||||||||| ||||||||    
T  4100784 ttaagtgacattagaaggtttaattttgtaattttcaaaaccctattt 4100831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 175 - 337
Target Start/End: Complemental strand, 2994174 - 2994023
Alignment:
Q  175 acctttgttgtcaatagcggcctaacgcggcgcgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtcc 274  Q
    |||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| ||| ||||||||  || || ||| ||||||||          
T  2994174 acctctgttgtcaatagcggccaaacgcggcgcaatcgcggccgaaaacagcctagcgcgtcagagcgcgaccgagtcacgtgttagggaaaag------ 2994081  T
Q  275 aaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcccgcttttccgg 337  Q
          |||||||||||||||||||| | ||  ||||||||||||||||||| ||||||||||    
T  2994080 -----tgggtttcgcggccgctttacatggattggtagcgggtcaaatcgccagcttttccgg 2994023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 253 - 416
Target Start/End: Original strand, 28160476 - 28160639
Alignment:
Q  253 gcgcgttcgggaaaagcggtccaaaatcgggtttcgcggccgctttacgtagagcggtagcgggtcaaatcgcc-cgcttttccgggtcgaaacgaaatt 351  Q
    ||||||| || ||||||||   |||| ||||||| ||||||||||| ||| |||||| |||||||| |  |||  | | ||||||||||||| |||||||    
T  28160476 gcgcgttaggcaaaagcggctgaaaaccgggttttgcggccgcttttcgtggagcgggagcgggtctag-cgcggcacgtttccgggtcgaagcgaaatt 28160574  T
Q  352 acgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattt 416  Q
    ||  ||||| ||||||||||||| || |||||| |||||||||||| ||||||||||||||||||    
T  28160575 acagaattacccctcacttaagtgacattagaaaggttaattttgtaattttcaaagccctattt 28160639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 16900621 - 16900498
Alignment:
Q  219 aaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaatcgggtttcgcggccgc-tttacgtagagcggtagcgggt 317  Q
    ||||||||||| ||||| ||| ||| ||||  ||||| ||| |||||||| ||  ||| | ||||||| |||||| | ||||| | |||||| |||||||    
T  16900621 aaaacagcctaccgcgtcagagcgctaccgattcgcgtgttagggaaaagtgggtcaatagcgggttttgcggccacctttacttggagcgggagcgggt 16900522  T
Q  318 caaatcgcccgcttttccgggtcg 341  Q
    ||||||||||||||||||||||||    
T  16900521 caaatcgcccgcttttccgggtcg 16900498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 28160439 - 28160473
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcg 214  Q
    ||||||||||||||||||||||||||||| |||||    
T  28160439 tgttgtcaatagcggcctaacgcggcgcggtcgcg 28160473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 11057220 - 11057097
Alignment:
Q  219 aaaacagcctagcgcgttagaacgcgaccgcatcgcgcgttcgggaaaagcggtccaaaatcgggtttcgcggcc-gctttacgtagagcggtagcgggt 317  Q
    ||||||||||| ||| | ||  ||| ||||  ||||||||| |||||||||||  ||| | |||||||||||||| | ||||| | |||||| |||||||    
T  11057220 aaaacagcctaccgcatcagggcgctaccgattcgcgcgttagggaaaagcgggtcaatagcgggtttcgcggccgggtttacctggagcgggagcgggt 11057121  T
Q  318 caaatcgcccgcttttccgggtcg 341  Q
    ||||||||||||||||||||||||    
T  11057120 caaatcgcccgcttttccgggtcg 11057097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 7199057 - 7199099
Alignment:
Q  174 aacctttgttgtcaatagcggcctaacgcggcgcgatcgcggc 216  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||    
T  7199057 aacctctgttgtcaatagcggccgaactcggcgcgatcgcggc 7199099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 51470373 - 51470337
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcggc 216  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  51470373 tgttgtcaatagcggccgaacgaggcgcgatcgcggc 51470337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 251 - 341
Target Start/End: Original strand, 5319534 - 5319625
Alignment:
Q  251 tcgcgcgttcgggaaaagcggtccaaaatcgggtttcgcggccgc-tttacgtagagcggtagcgggtcaaatcgcccgcttttccgggtcg 341  Q
    ||||||||| |||||||||||  | | | |||||||||||||||| ||||| | |||||| |||||||||||||||| ||||||||||||||    
T  5319534 tcgcgcgttagggaaaagcgggtccatagcgggtttcgcggccgcctttacctggagcgggagcgggtcaaatcgccagcttttccgggtcg 5319625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 18548 - 18584
Alignment:
Q  180 tgttgtcaatagcggcctaacgcggcgcgatcgcggc 216  Q
    ||||||||||||||||| |||||||||||||||||||    
T  18548 tgttgtcaatagcggccgaacgcggcgcgatcgcggc 18584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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