View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_17 (Length: 565)
Name: NF6641_low_17
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 142 - 419
Target Start/End: Complemental strand, 51067041 - 51066771
Alignment:
| Q |
142 |
tcaagtctaatttcactaagatgaacgcatgattgaaattattgatccatctatatatatgattgatactaatattgattattgcagattaggtattgaa |
241 |
Q |
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| T |
51067041 |
tcaagtctaattttactaagatgaacgcatgattgaaatt---gatccatctatat----gattgatactaatattgattattgcagattaggtattgaa |
51066949 |
T |
|
| Q |
242 |
agtttggtattagaatcttctgatagcttgagagttggtggatttgctttaacggtatgggaaaatgcttggaaggcgttggatgttgttggtgttggaa |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51066948 |
agtttggtattagaatcttctgatagcttgagagttggtggatttgctttaacggtatgggaaaatgcttggaaggcgttggatgttgttggtgttggaa |
51066849 |
T |
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| Q |
342 |
ccatcctccgccaccaacatctacaacttcatgggtaagtacaacaaaaactactacatctctccctattgcaatttc |
419 |
Q |
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| T |
51066848 |
ccatcctccgccaccaacatctacaacttcatgggtaagtacaacaaaaactactacatctctccctattgcagtttc |
51066771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 221 - 382
Target Start/End: Original strand, 40612611 - 40612772
Alignment:
| Q |
221 |
tattgcagattaggtattgaaagtttggtattagaatcttctgatagcttgagagttggtggatttgctttaacggtatgggaaaatgcttggaaggcgt |
320 |
Q |
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||||| ||||| ||| | ||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||| | |
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| T |
40612611 |
tattgtagattgggtgtagaaagtttggtattagaatcttcagatagtttgcgagtcggtggatttgctttaacgttatgggaaaatgcttggaaggcct |
40612710 |
T |
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| Q |
321 |
tggatgttgttggtgttggaaccatcctccgccaccaacatctacaacttcatgggtaagta |
382 |
Q |
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| T |
40612711 |
tggatgttgtaggtgttggaaatatcctccgccaccaacatctacaacttcatcggtaagta |
40612772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 51067607 - 51067521
Alignment:
| Q |
1 |
aagatattgtgatcgtaggagctgtaattgctggcctcacaacatccttgggacttcacaggtactctttctctctacatctatata |
87 |
Q |
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| T |
51067607 |
aagatattgtgatcgtaggagctggaattgctggcctcacaacatccttgggacttcacaggtactctttctctctacatctatata |
51067521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 216 - 385
Target Start/End: Complemental strand, 51033434 - 51033265
Alignment:
| Q |
216 |
ttgattattgcagattaggtattgaaagtttggtattagaatcttctgatagcttgagagttggtggatttgctttaacggtatgggaaaatgcttggaa |
315 |
Q |
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| T |
51033434 |
ttgataattgcagattaggcgttagaagtttggtattagaatcttccgatagtttgagagtaagcggatttgctttaacaatatgggaaaatgcttggaa |
51033335 |
T |
|
| Q |
316 |
ggcgttggatgttgttggtgttggaaccatcctccgccaccaacatctacaacttcatgggtaagtacaa |
385 |
Q |
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|| |||||||||||||| || ||| ||||| |||||||||||| | | |||||||||||||||||| |
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| T |
51033334 |
ggtcttggatgttgttggcgtaggagatatccttcgccaccaacatttgcggcttcatgggtaagtacaa |
51033265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 249 - 381
Target Start/End: Complemental strand, 51036668 - 51036536
Alignment:
| Q |
249 |
tattagaatcttctgatagcttgagagttggtggatttgctttaacggtatgggaaaatgcttggaaggcgttggatgttgttggtgttggaaccatcct |
348 |
Q |
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| T |
51036668 |
tattagaatcttcggatggtttgagagtgagtggatttgctttaataatatggaaaaatgcttggaaggcattggatgttgttggtgttggagacatcct |
51036569 |
T |
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| Q |
349 |
ccgccaccaacatctacaacttcatgggtaagt |
381 |
Q |
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|| ||| |||||||||||||| |||||||||| |
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| T |
51036568 |
tcgtcacaaacatctacaactttatgggtaagt |
51036536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 241 - 378
Target Start/End: Complemental strand, 51070093 - 51069956
Alignment:
| Q |
241 |
aagtttggtattagaatcttctgatagcttgagagttggtggatttgctttaacggtatgggaaaatgcttggaaggcgttggatgttgttggtgttgga |
340 |
Q |
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|||||||||||| |||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||| || ||||||| ||||||||||||| |
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| T |
51070093 |
aagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttggatgctgttggtgttgga |
51069994 |
T |
|
| Q |
341 |
accatcctccgccaccaacatctacaacttcatgggta |
378 |
Q |
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| T |
51069993 |
gatatcctccgccacaaacatatacatctttatgggta |
51069956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40611754 - 40611817
Alignment:
| Q |
1 |
aagatattgtgatcgtaggagctgtaattgctggcctcacaacatccttgggacttcacaggta |
64 |
Q |
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||||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
40611754 |
aagatattgtgattgtgggagctggaattgctggcctcacaacatccttggcacttcacaggta |
40611817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 51066509 - 51066454
Alignment:
| Q |
490 |
ttttatacattggaatcgaacacacacactacgcatcaattatttgcgacagacctca |
547 |
Q |
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| T |
51066509 |
ttttatacattggaatcgaacacacac--tacgcatcaattatttgcgacagacctca |
51066454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 51033555 - 51033492
Alignment:
| Q |
1 |
aagatattgtgatcgtaggagctgtaattgctggcctcacaacatccttgggacttcacaggta |
64 |
Q |
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||||||||||||| || ||||||| ||||||||| ||||||||||| |||| |||||||||||| |
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| T |
51033555 |
aagatattgtgattgtgggagctggaattgctggtctcacaacatctttggcacttcacaggta |
51033492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 51036963 - 51036900
Alignment:
| Q |
1 |
aagatattgtgatcgtaggagctgtaattgctggcctcacaacatccttgggacttcacaggta |
64 |
Q |
| |
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||||||||||||| || ||||||| ||||||||| |||||||||||||| |||||| ||||||| |
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| T |
51036963 |
aagatattgtgattgtgggagctggaattgctggactcacaacatccttaggactttacaggta |
51036900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 51067440 - 51067392
Alignment:
| Q |
88 |
tatggtggtcagctgaaggcggatctccgatggctcaaggctgatcgat |
136 |
Q |
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| T |
51067440 |
tatggtggtcagctgaaggcagagctccgatggcccaagtttgatcgat |
51067392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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