View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_22 (Length: 487)
Name: NF6641_low_22
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 318 - 475
Target Start/End: Complemental strand, 18228459 - 18228302
Alignment:
| Q |
318 |
taattataaagatagtgagtgatgtgggaatgtattgtctcatgttaaacttcctccggttttctccttgagcaatctcagccctctattccttttaata |
417 |
Q |
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| T |
18228459 |
taattataaagatagtgagtgatgtgggaatgtattgtctcatgttaaacttcctccagttttctccttgagcaatatcagccctctattccttttaata |
18228360 |
T |
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| Q |
418 |
cagatcaacggctaagaataaaaccaattaaaaattaacataaattttgtctatttca |
475 |
Q |
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| T |
18228359 |
cagatcaacgactaagaataaaaccaattaaaaattaacaaaaattttgtctatttca |
18228302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 182 - 319
Target Start/End: Complemental strand, 18229028 - 18228880
Alignment:
| Q |
182 |
ggaggtacaatggtttgtgtttatgtgaaga---ggtttcataaag---------ttagaaagccacatacgaaaagggaaagttttgtgagccacaaat |
269 |
Q |
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| T |
18229028 |
ggaggtacaatggtttgtgtttatgtgaagaagaggtttcataaaggtcaaaaagttagaaagccacatacgaaaagggaaagttttgtgagccacaaat |
18228929 |
T |
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| Q |
270 |
tgttttggcctatgaaattcatacagttggcagtagaattcatgcacgta |
319 |
Q |
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| T |
18228928 |
t-ttttggcctatgagattcatacagttggcagtaggattcatgcacgta |
18228880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 18229183 - 18229103
Alignment:
| Q |
20 |
ggtagtaacatcggtgttgtgtgtttgaaaaatggttctcccgaaaagctttatggttgaatcattagtcatctcaggtag |
100 |
Q |
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| T |
18229183 |
ggtagtaacatcggtgttgtgtgtttgaaaaatggttctcccgaaaagctttatggttgaatcattagtcatctcaggtag |
18229103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 18187562 - 18187483
Alignment:
| Q |
20 |
ggtagtaacatcggtgttgtgtgtttgaaaaatggttctcccgaaaagctttatggttgaatcattagtcatctcaggta |
99 |
Q |
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| T |
18187562 |
ggtaggaacatcggtgttgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtcatctcaggta |
18187483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 18192555 - 18192491
Alignment:
| Q |
30 |
tcggtgttgtgtgtttgaaaaatggttctcccgaaaagctttatggttgaatcattagtcatctc |
94 |
Q |
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| T |
18192555 |
tcggtgttgcgtgtttgaaaaattgttctcccgaaaagctttatggttgaatcattagtcatctc |
18192491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 18187327 - 18187273
Alignment:
| Q |
230 |
aagccacatacgaaaagggaaagttttgtgagccacaaattgttttggcctatga |
284 |
Q |
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| T |
18187327 |
aagccacatcagaaaagggaaagttttgtgagccacaaattgttttggcctatga |
18187273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 18197109 - 18197037
Alignment:
| Q |
27 |
acatcggtgttgtgtgtttgaaaaatggttctcccgaaaagctttatggttgaatcattagtcatctcaggta |
99 |
Q |
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| T |
18197109 |
acatcgatgttgtgtgttataaaaatcgttctcccaaaaagcgttatggttgaattattaatcatctcgggta |
18197037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 476
Target Start/End: Complemental strand, 1962650 - 1962514
Alignment:
| Q |
342 |
tgggaatgtattgtctcatgttaaacttcctccggttttctcctt--gagcaatctcagccctctattccttttaataca-gatcaacggctaagaataa |
438 |
Q |
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| T |
1962650 |
tgggaatggattgtctccagtcaaaatttctcctgttttctcctgtggagcaatcacagcccttcattccttttaatggaagatcaacggcttataataa |
1962551 |
T |
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| Q |
439 |
aaccaattaaaaattaacataaattttgtctatttcat |
476 |
Q |
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| T |
1962550 |
aatcaattaaaa-tcaacataaattctgtctatttcat |
1962514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 450
Target Start/End: Original strand, 1961987 - 1962097
Alignment:
| Q |
343 |
gggaatgtattgtctcatgttaaacttcctccggttttctcctt--gagcaatctcagccctctattccttttaata-cagatcaacggctaagaataaa |
439 |
Q |
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| T |
1961987 |
gggaatggattgtctccagtcaaaatttctccagttttctcctgtggagcaatcatagccctccattccttttaatggcagatcaacggcttataataaa |
1962086 |
T |
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| Q |
440 |
accaattaaaa |
450 |
Q |
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| T |
1962087 |
accaattaaaa |
1962097 |
T |
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