View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_low_26 (Length: 473)

Name: NF6641_low_26
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_low_26
NF6641_low_26
[»] chr4 (27 HSPs)
chr4 (79-458)||(4953528-4953908)
chr4 (164-287)||(25315292-25315415)
chr4 (201-323)||(1676318-1676442)
chr4 (201-323)||(1682846-1682970)
chr4 (165-323)||(27302710-27302870)
chr4 (166-287)||(9783044-9783165)
chr4 (201-317)||(12111360-12111477)
chr4 (201-317)||(34864322-34864438)
chr4 (201-287)||(5906781-5906867)
chr4 (201-287)||(18897959-18898045)
chr4 (201-287)||(15192171-15192257)
chr4 (322-366)||(26703234-26703278)
chr4 (324-366)||(3797579-3797621)
chr4 (324-366)||(40795327-40795369)
chr4 (323-366)||(15404845-15404888)
chr4 (323-366)||(15811899-15811942)
chr4 (323-366)||(19821029-19821072)
chr4 (201-272)||(25050141-25050212)
chr4 (323-366)||(26060818-26060861)
chr4 (323-366)||(56195842-56195885)
chr4 (332-366)||(5681741-5681775)
chr4 (201-287)||(22119614-22119700)
chr4 (201-287)||(24925773-24925859)
chr4 (332-366)||(56199169-56199203)
chr4 (246-287)||(9288223-9288264)
chr4 (201-317)||(10320248-10320366)
chr4 (323-366)||(18860087-18860128)
[»] chr8 (22 HSPs)
chr8 (201-323)||(14977129-14977254)
chr8 (201-323)||(12956457-12956581)
chr8 (201-300)||(24120199-24120298)
chr8 (165-323)||(16054226-16054386)
chr8 (200-300)||(28901389-28901488)
chr8 (201-287)||(6358666-6358752)
chr8 (160-287)||(13081998-13082125)
chr8 (195-319)||(28902051-28902177)
chr8 (209-323)||(5570164-5570280)
chr8 (209-313)||(29047352-29047455)
chr8 (201-300)||(16052326-16052424)
chr8 (245-288)||(32239299-32239342)
chr8 (324-366)||(33883114-33883156)
chr8 (330-366)||(43681656-43681692)
chr8 (377-440)||(3604721-3604784)
chr8 (323-366)||(13097233-13097276)
chr8 (212-287)||(13530166-13530241)
chr8 (212-287)||(13619705-13619780)
chr8 (165-287)||(26882340-26882462)
chr8 (201-287)||(10866956-10867042)
chr8 (324-358)||(27805359-27805393)
chr8 (322-366)||(12820638-12820682)
[»] chr2 (21 HSPs)
chr2 (165-287)||(35707735-35707857)
chr2 (201-287)||(21505200-21505286)
chr2 (201-287)||(19949615-19949702)
chr2 (232-300)||(35031701-35031768)
chr2 (164-283)||(25473968-25474087)
chr2 (212-287)||(30998750-30998825)
chr2 (201-273)||(32619610-32619682)
chr2 (322-366)||(13971665-13971709)
chr2 (211-287)||(21843063-21843139)
chr2 (211-287)||(21844690-21844766)
chr2 (164-287)||(1733032-1733154)
chr2 (323-366)||(31427305-31427348)
chr2 (235-287)||(15829136-15829188)
chr2 (201-323)||(19541005-19541129)
chr2 (323-366)||(45454172-45454215)
chr2 (324-366)||(6827078-6827120)
chr2 (209-287)||(18116959-18117037)
chr2 (332-366)||(25820617-25820651)
chr2 (324-366)||(30720100-30720142)
chr2 (324-364)||(38460582-38460622)
chr2 (322-366)||(45457460-45457504)
[»] chr6 (14 HSPs)
chr6 (209-323)||(13759474-13759590)
chr6 (201-288)||(16387308-16387395)
chr6 (160-287)||(15574852-15574978)
chr6 (221-323)||(16527878-16527982)
chr6 (201-288)||(20495854-20495940)
chr6 (201-282)||(30355294-30355375)
chr6 (209-286)||(32930534-32930611)
chr6 (201-273)||(14924492-14924564)
chr6 (215-287)||(22262332-22262404)
chr6 (322-362)||(34390190-34390230)
chr6 (323-366)||(2773155-2773198)
chr6 (201-300)||(26512826-26512924)
chr6 (201-300)||(26517942-26518040)
chr6 (250-287)||(17198816-17198853)
[»] chr7 (28 HSPs)
chr7 (177-323)||(22067829-22067977)
chr7 (201-300)||(29544487-29544585)
chr7 (164-282)||(315116-315234)
chr7 (211-300)||(23124878-23124966)
chr7 (221-323)||(1255236-1255340)
chr7 (201-287)||(20470871-20470957)
chr7 (201-282)||(9385456-9385537)
chr7 (167-294)||(7815257-7815383)
chr7 (220-315)||(9066119-9066214)
chr7 (323-366)||(48645779-48645822)
chr7 (209-287)||(20446215-20446293)
chr7 (322-366)||(4595767-4595811)
chr7 (165-300)||(7142030-7142164)
chr7 (160-287)||(21471724-21471851)
chr7 (390-438)||(26808560-26808608)
chr7 (212-288)||(30405575-30405651)
chr7 (199-277)||(7494677-7494755)
chr7 (324-366)||(11397820-11397862)
chr7 (322-364)||(30057911-30057953)
chr7 (388-438)||(30057982-30058032)
chr7 (251-300)||(21545848-21545896)
chr7 (165-287)||(2632497-2632619)
chr7 (245-287)||(2351009-2351051)
chr7 (324-366)||(4695793-4695835)
chr7 (332-366)||(17731132-17731166)
chr7 (388-438)||(22952784-22952834)
chr7 (245-282)||(28952005-28952042)
chr7 (323-366)||(44363685-44363726)
[»] chr1 (24 HSPs)
chr1 (165-323)||(12423937-12424097)
chr1 (201-287)||(12810290-12810376)
chr1 (167-322)||(26657410-26657567)
chr1 (165-287)||(8247718-8247840)
chr1 (205-300)||(23223383-23223478)
chr1 (164-282)||(23519821-23519940)
chr1 (160-287)||(21451877-21452003)
chr1 (210-323)||(50047158-50047273)
chr1 (212-323)||(11770017-11770130)
chr1 (201-287)||(34381676-34381762)
chr1 (165-300)||(30675415-30675550)
chr1 (209-288)||(24903355-24903434)
chr1 (208-287)||(30781735-30781814)
chr1 (201-287)||(25730632-25730718)
chr1 (323-366)||(21110912-21110955)
chr1 (323-366)||(42022955-42022998)
chr1 (201-287)||(25266406-25266491)
chr1 (245-287)||(25494540-25494582)
chr1 (245-300)||(21550928-21550982)
chr1 (374-440)||(2733517-2733583)
chr1 (324-366)||(8435444-8435486)
chr1 (324-366)||(29642986-29643028)
chr1 (210-287)||(18795158-18795235)
chr1 (322-366)||(34732099-34732143)
[»] chr5 (28 HSPs)
chr5 (202-287)||(17382096-17382181)
chr5 (201-323)||(18222461-18222585)
chr5 (169-287)||(12340075-12340191)
chr5 (160-300)||(24841680-24841819)
chr5 (201-287)||(24517322-24517408)
chr5 (201-287)||(25594753-25594839)
chr5 (164-300)||(15205576-15205709)
chr5 (164-250)||(22229740-22229826)
chr5 (164-323)||(25680527-25680688)
chr5 (205-273)||(30072150-30072218)
chr5 (165-287)||(22967903-22968025)
chr5 (201-287)||(17027495-17027581)
chr5 (324-364)||(7625421-7625461)
chr5 (201-287)||(11274391-11274478)
chr5 (225-300)||(16634038-16634112)
chr5 (323-366)||(30066636-30066679)
chr5 (324-366)||(4099291-4099333)
chr5 (195-287)||(17695459-17695551)
chr5 (326-366)||(36357065-36357105)
chr5 (201-284)||(16622731-16622813)
chr5 (324-366)||(7271343-7271385)
chr5 (324-366)||(17944946-17944988)
chr5 (324-366)||(18239268-18239310)
chr5 (324-366)||(21332440-21332482)
chr5 (201-287)||(23157849-23157935)
chr5 (246-287)||(24410990-24411031)
chr5 (210-287)||(26330129-26330206)
chr5 (319-366)||(32838192-32838240)
[»] chr3 (27 HSPs)
chr3 (164-323)||(1475303-1475464)
chr3 (201-323)||(13911233-13911357)
chr3 (201-288)||(33914622-33914709)
chr3 (249-323)||(18065832-18065905)
chr3 (201-287)||(21017845-21017931)
chr3 (209-323)||(11521116-11521231)
chr3 (201-287)||(12409426-12409512)
chr3 (201-282)||(19219277-19219358)
chr3 (160-287)||(8402611-8402738)
chr3 (201-276)||(25919536-25919611)
chr3 (209-287)||(4780748-4780825)
chr3 (201-287)||(10341764-10341849)
chr3 (167-323)||(12573224-12573382)
chr3 (167-323)||(13549688-13549846)
chr3 (209-317)||(25883079-25883189)
chr3 (323-366)||(30219750-30219793)
chr3 (261-323)||(27415199-27415260)
chr3 (210-287)||(21829193-21829270)
chr3 (323-366)||(19304444-19304487)
chr3 (245-288)||(21813498-21813541)
chr3 (245-323)||(26297761-26297841)
chr3 (324-366)||(9158315-9158357)
chr3 (324-366)||(16244283-16244325)
chr3 (332-366)||(55034681-55034715)
chr3 (245-285)||(19263961-19264001)
chr3 (330-366)||(25260996-25261032)
chr3 (330-366)||(52309380-52309416)
[»] scaffold1657 (1 HSPs)
scaffold1657 (374-458)||(282-366)
[»] scaffold0171 (2 HSPs)
scaffold0171 (201-323)||(21365-21489)
scaffold0171 (201-287)||(6164-6250)
[»] scaffold0330 (1 HSPs)
scaffold0330 (322-366)||(14249-14293)
[»] scaffold0045 (1 HSPs)
scaffold0045 (323-366)||(90085-90128)
[»] scaffold0002 (1 HSPs)
scaffold0002 (164-286)||(446936-447058)
[»] scaffold1063 (1 HSPs)
scaffold1063 (324-366)||(2812-2854)
[»] scaffold0520 (1 HSPs)
scaffold0520 (324-366)||(1304-1346)
[»] scaffold0080 (1 HSPs)
scaffold0080 (324-366)||(27436-27478)
[»] scaffold0757 (1 HSPs)
scaffold0757 (323-366)||(5677-5720)
[»] scaffold0282 (1 HSPs)
scaffold0282 (201-287)||(22606-22692)
[»] scaffold0134 (1 HSPs)
scaffold0134 (323-366)||(7562-7605)
[»] scaffold1809 (1 HSPs)
scaffold1809 (324-366)||(389-431)
[»] scaffold0496 (1 HSPs)
scaffold0496 (374-439)||(10188-10253)
[»] scaffold0043 (1 HSPs)
scaffold0043 (246-287)||(58758-58799)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 79 - 458
Target Start/End: Original strand, 4953528 - 4953908
Alignment:
Q  79 aaggagtgatttaaaaatgctaaaagtggttatggaattagggtttgatatttcaagaccaataatttattgatcttgtgtggttttgatgacagagtat 178  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4953528 aaggagtgatttaaaaatgttaaaagtggttatggaattagggtttgataattcaagatcaataatttattgatcttgtgtggttttgatgacagagtat 4953627  T
Q  179 catatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattg 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4953628 catatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagataaaggagttgttaatggtttgaggaacatattg 4953727  T
Q  279 tattgtttttcactcgattcgtaattcaattttatcctatatcattgataaacttttagcaagtatac-taaaaatgcatcgaagtaat-nnnnnnntcg 376  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||        |||    
T  4953728 tattg-ttttcactcaattcgtaattcagttttatcctatatcattgataaacttttaacaagtatacttaaaaatgcatcgaagtgataaaaaaaatcg 4953826  T
Q  377 tctccacaaaaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatggaggatatgtagagaatat 458  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4953827 tctccacaagaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatggaggatatgtagagaatat 4953908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 164 - 287
Target Start/End: Complemental strand, 25315415 - 25315292
Alignment:
Q  164 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 263  Q
    |||||||| ||| ||||||||||||| |   ||||| |||||||| ||||||||  ||||||||| |||||||||| |||||||||||||||| |||| |    
T  25315415 ttgatgaccgagcatcatatgacattttagttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgtcaatgct 25315316  T
Q  264 ttgaggaacatattgtattgtttt 287  Q
    ||||||||||||||||||||||||    
T  25315315 ttgaggaacatattgtattgtttt 25315292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 1676442 - 1676318
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcga---tt 297  Q
    |||| ||| ||||||||  ||||||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||| || ||||   ||    
T  1676442 tttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgtttt-cattcgagtttt 1676344  T
Q  298 cgtaattcaattttatcctatatcat 323  Q
     |||||||||||||||||||||||||    
T  1676343 tgtaattcaattttatcctatatcat 1676318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 1682970 - 1682846
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcga---tt 297  Q
    |||| ||| ||||||||  ||||||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||| || ||||   ||    
T  1682970 tttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgtttt-cattcgagtttt 1682872  T
Q  298 cgtaattcaattttatcctatatcat 323  Q
     |||||||||||||||||||||||||    
T  1682871 tgtaattcaattttatcctatatcat 1682846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 165 - 323
Target Start/End: Original strand, 27302710 - 27302870
Alignment:
Q  165 tgatgacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtt 264  Q
    |||||||| || ||||||| ||||| ||| ||||| ||||| || ||||| ||| ||||||||| ||||| ||||  |||||||| |||||| |||||||    
T  27302710 tgatgacaaagcatcatataacattttgactatgttttttaataattttcgttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtt 27302809  T
Q  265 tgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 323  Q
    |||||||||| |||||||| ||||||||||| ||   ||||||||||| ||| ||| |||||    
T  27302810 tgaggaacattttgtattg-ttttcactcgagtcattgtaattcaattatatactagatcat 27302870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 287
Target Start/End: Complemental strand, 9783165 - 9783044
Alignment:
Q  166 gatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtt 264  Q
    |||||||||| ||||||||||||| ||  ||||| |||||||| |||||||||  ||||||||  |||| ||||| ||| |||||||||||| ||| |||    
T  9783165 gatgacagagcatcatatgacattttgcctatgt-ttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagtt 9783067  T
Q  265 tgaggaacatattgtattgtttt 287  Q
    |||||||||||||||||||||||    
T  9783066 tgaggaacatattgtattgtttt 9783044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 317
Target Start/End: Complemental strand, 12111477 - 12111360
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 298  Q
    |||||||| |||| |||| ||||||||| ||| |||||| || ||||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||      
T  12111477 ttttagtacttttatttgcatttgaagacaaa-aagatgaga-atagaggagttgtcaatggtttgaggaacatattgtattttttttcacacgagtcgt 12111380  T
Q  299 -gtaattcaattttatccta 317  Q
     |||||||| ||||||||||    
T  12111379 tgtaattcacttttatccta 12111360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 317
Target Start/End: Complemental strand, 34864438 - 34864322
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcg--attc 298  Q
    |||||||| ||||||||||||||||||| |||||||||   || |||||||||||| ||||||||||||||| |||  ||||| ||||||||||  |||     
T  34864438 ttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaacgtatcatattg-ttttcactcgtcatt- 34864341  T
Q  299 gtaattcaattttatccta 317  Q
    |||||||| ||||||||||    
T  34864340 gtaattcacttttatccta 34864322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 5906867 - 5906781
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| |||| |||| ||||||||| ||| |||||| ||| ||||||| |||| |||||||||||||||||||| |||||||||    
T  5906867 ttttagtacttttatttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatattatattgtttt 5906781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 18897959 - 18898045
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||| || ||||||||| ||||||||| ||||||| || |||||||| || |||| |||||||| |||||||||||||||||||||    
T  18897959 ttttactacttttctttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaaggaacatattgtattgtttt 18898045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 15192171 - 15192257
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||| ||| ||||||||| ||||||||| |||||||||| ||||  | ||||||||||||  |||| ||||||||||||||||||||    
T  15192171 ttttcgtacttttctttgcatttgaagacaaataagatgagagacgggggagttgttaattttttgtggaacatattgtattgtttt 15192257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 26703234 - 26703278
Alignment:
Q  322 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||    
T  26703234 attgatagacttttagcaagtatactaaaaatgcatcaaagtaat 26703278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 3797579 - 3797621
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  3797579 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 3797621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 40795369 - 40795327
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  40795369 tgataaacttttagcaagtgtactaaaaatgtatcgaagtaat 40795327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 15404845 - 15404888
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||    
T  15404845 ttgatagacttttagcaagtgtactaaatatgcatcgaagtaat 15404888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 15811899 - 15811942
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| || |||||||||| |||||||||||||||||||||||    
T  15811899 ttgatagacctttagcaagtgtactaaaaatgcatcgaagtaat 15811942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 19821072 - 19821029
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||    
T  19821072 ttgatatacttttagcaagtgtactaaaaatgtatcgaagtaat 19821029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 25050212 - 25050141
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaac 272  Q
    ||||||||||||| |||||||||||||| ||||||||||  || ||||| | || | || ||||||||||||    
T  25050212 ttttagtatttttatttgtatttgaagacaaataagatgaaagttagagaaattatcaacggtttgaggaac 25050141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 26060861 - 26060818
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||    
T  26060861 ttgatagacttttagcaagtgtactaaaaatgtatcgaagtaat 26060818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 56195885 - 56195842
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| | ||||||||||| |||||||||||||||||||||||    
T  56195885 ttgatagatttttagcaagtgtactaaaaatgcatcgaagtaat 56195842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 366
Target Start/End: Complemental strand, 5681775 - 5681741
Alignment:
Q  332 ttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||| |||||||||||||||||||||||    
T  5681775 ttttagcaagtgtactaaaaatgcatcgaagtaat 5681741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 22119614 - 22119700
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||  ||||||||| ||||||||  |||| ||| || |  || ||||||||| |||||||||||||||| |||||| ||||||    
T  22119614 ttttagttattttctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtttgaggaacaaattgtaatgtttt 22119700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 24925773 - 24925859
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||  |||| |||||||||||||| |||||||| || |  || | ||||||| ||| ||||||| ||||| ||||||||||||    
T  24925773 ttttagttattttatttgtatttgaagataaataagaagtcatttaaaagagttgtcaatcgtttgagtaacattttgtattgtttt 24925859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 366
Target Start/End: Complemental strand, 56199203 - 56199169
Alignment:
Q  332 ttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||| |||||||||||||||||||||||    
T  56199203 ttttagcaagtgtactaaaaatgcatcgaagtaat 56199169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 9288223 - 9288264
Alignment:
Q  246 agaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||||||| | |||||||||||||||| |||||||||||||    
T  9288223 agaggagttttcaatggtttgaggaacaaattgtattgtttt 9288264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 317
Target Start/End: Complemental strand, 10320366 - 10320248
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 298  Q
    |||||||| ||||||||  ||||||||| ||| ||| |  | | |||| ||||||||||| ||| ||| |||||||||||||  ||||||||||| ||      
T  10320366 ttttagtaattttctttccatttgaagataaaaaagtttagcggtagacgagttgttaatagttagagaaacatattgtatt-cttttcactcgagtcgt 10320268  T
Q  299 -gtaattcaattttatccta 317  Q
     |||||||| ||||||||||    
T  10320267 tgtaattcacttttatccta 10320248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 18860128 - 18860087
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  18860128 ttgataaacttttagcaagtgtactaaaaat--atcgaagtaat 18860087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 14977254 - 14977129
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 298  Q
    |||||| | ||||||||| |||| |||| |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||      
T  14977254 ttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgtttttcactcgagtcat 14977155  T
Q  299 -gtaattcaattttatcctatatcat 323  Q
     |||||||| |||||||||| |||||    
T  14977154 tgtaattcacttttatcctaaatcat 14977129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 12956457 - 12956581
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcga---tt 297  Q
    |||||||| ||||||||| ||||||||| |||||||||| ||| |||||||||||| |||||||||||||| ||||||||||| |||||||||||    |    
T  12956457 ttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattg-ttttcactcgagtcat 12956555  T
Q  298 cgtaattcaattttatcctatatcat 323  Q
    ||||||||| |||||||||| |||||    
T  12956556 cgtaattcacttttatcctaaatcat 12956581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 24120199 - 24120298
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    |||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||| || ||||||||||| |||||||||| |||||||| | ||||||    
T  24120199 ttttagtacttttctttgcatttgaagagaaataagatgagagttagaggagttgtcaacggtttgaggaatatattgtattttttttcacccaattcgt 24120298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 323
Target Start/End: Original strand, 16054226 - 16054386
Alignment:
Q  165 tgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 263  Q
    ||||||||||| ||||||||||||| ||  ||||||||| |||| |||||||||| ||||||||| |||||||||  ||| |||||||||||| |||| |    
T  16054226 tgatgacagagcatcatatgacattttggctatgtcttt-agtactttttctttgcatttgaagacaaataagataagagttagaggagttgtcaatgat 16054324  T
Q  264 ttgaggaacatattgtattgtttttcactcga---ttcgtaattcaattttatcctatatcat 323  Q
    || |||||||| |||||||| |||||||||||    | |||||||| |||||||||| |||||    
T  16054325 ttaaggaacattttgtattg-ttttcactcgagttgttgtaattcatttttatcctagatcat 16054386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 28901488 - 28901389
Alignment:
Q  200 cttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcg 299  Q
    |||||| || ||||||||| ||||||| | ||||||| || |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||    
T  28901488 cttttaatacttttctttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtattg-ttttcactcgagtcg 28901390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 6358666 - 6358752
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| |||| |||| ||||||||| | ||||| || |||||||||||||||||||||||||| | ||||||||||||||||||    
T  6358666 ttttagtacttttatttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaacatattgtattgtttt 6358752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 13082125 - 13081998
Alignment:
Q  160 ggttttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 258  Q
    |||| |||||||| |  ||||||||||||| ||| ||||| |||||||| |||||||||| ||||||||| |||||||||| ||| |||||||||||| |    
T  13082125 ggttgtgatgacaaaacatcatatgacattttgattatgt-ttttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgtca 13082027  T
Q  259 atggtttgaggaacatattgtattgtttt 287  Q
    ||| |||||| ||||  ||||| ||||||    
T  13082026 atgatttgagaaacacgttgtagtgtttt 13081998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 319
Target Start/End: Original strand, 28902051 - 28902177
Alignment:
Q  195 tatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcg 294  Q
    ||||| |||||||| |||| |||| ||||  ||  || |||||||  ||||||||||||| ||||||||||||| |||||||||||||| |||||| |||    
T  28902051 tatgttttttagtacttttatttgcatttataggcaagtaagatgatagatagaggagttattaatggtttgagaaacatattgtattg-ttttcattcg 28902149  T
Q  295 attc---gtaattcaattttatcctata 319  Q
    | ||   |||||||| ||||||||||||    
T  28902150 agtcgttgtaattcacttttatcctata 28902177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 323
Target Start/End: Complemental strand, 5570280 - 5570164
Alignment:
Q  209 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcga---ttcgtaattc 305  Q
    ||||| |||| ||||||||| |||||||||| ||  |  ||||||||| |||  ||||||||||||||||||||| |||||||||||    | |||||||    
T  5570280 tttttttttgcatttgaagaaaaataagatgagatttgaaggagttgtcaatactttgaggaacatattgtattg-ttttcactcgagttgttgtaattc 5570182  T
Q  306 aattttatcctatatcat 323  Q
    | ||||||||||||||||    
T  5570181 acttttatcctatatcat 5570164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 313
Target Start/End: Complemental strand, 29047455 - 29047352
Alignment:
Q  209 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattc 305  Q
    |||||||||| ||||||| | |||||||||| ||| |||||||||||| ||||||   ||||||| ||||||||| ||||||||||| ||   |||||||    
T  29047455 tttttctttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggt---aggaacacattgtattg-ttttcactcgagtcactgtaattc 29047360  T
Q  306 aattttat 313  Q
    ||||||||    
T  29047359 aattttat 29047352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 16052424 - 16052326
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    |||||||| |||| |||| |||||| || |||||| ||| ||| |||||||||||| ||||||||||  |||||||| || || ||||||||||| ||||    
T  16052424 ttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtttgaataacatattttaatg-ttttcactcgagtcgt 16052326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 32239299 - 32239342
Alignment:
Q  245 tagaggagttgttaatggtttgaggaacatattgtattgttttt 288  Q
    |||||||||||| ||||||||||| |||||||||||||||||||    
T  32239299 tagaggagttgtcaatggtttgagtaacatattgtattgttttt 32239342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 33883114 - 33883156
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  33883114 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 33883156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 43681656 - 43681692
Alignment:
Q  330 acttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43681656 acttttagcaagtgtactaaaaatgcatcgaagtaat 43681692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 3604721 - 3604784
Alignment:
Q  377 tctccacaaaaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatgg 440  Q
    |||||| ||| ||||||||||| |||||||| ||||||||||   || ||||||||||||||||    
T  3604721 tctccataaagattgtttcaatctcaactcggcaatttaattacgattaggatttaacaaatgg 3604784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 13097276 - 13097233
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  13097276 ttgataaacttttagcaagtgtactaaaaatatatcgaagtaat 13097233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 13530241 - 13530166
Alignment:
Q  212 ttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||||| | ||||||| |||||||| || |  |||||||| |||  |||||||||||||||| ||||||||||||    
T  13530241 ttctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgtttt 13530166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 13619780 - 13619705
Alignment:
Q  212 ttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||||| | ||||||| |||||||| || |  |||||||| |||  |||||||||||||||| ||||||||||||    
T  13619780 ttctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgtttt 13619705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 287
Target Start/End: Original strand, 26882340 - 26882462
Alignment:
Q  165 tgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 263  Q
    ||||||||||||||||||||||||  ||  ||||| |||||||| |||||||| | | | ||||| |||||| ||| ||  || ||||||||  ||||||    
T  26882340 tgatgacagagtatcatatgacatcttggctatgt-ttttagtactttttcttcgcaatcgaagacaaataaaatgagatttaaaggagttgccaatggt 26882438  T
Q  264 ttgaggaacatattgtattgtttt 287  Q
    || |||| |||| |||||||||||    
T  26882439 ttaaggagcataatgtattgtttt 26882462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 10866956 - 10867042
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||  ||||||||| ||| ||||  |||||||| || |  ||||| |||||| |||||||||||||| || ||||||||||||    
T  10866956 ttttagttattttctttgaattcgaaggcaaataagaggtcatttagagtagttgtcaatggtttgaggaatattttgtattgtttt 10867042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 27805359 - 27805393
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatc 358  Q
    ||||||||||||||||||| |||||||||||||||    
T  27805359 tgataaacttttagcaagtgtactaaaaatgcatc 27805393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 12820638 - 12820682
Alignment:
Q  322 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||||||||||| | ||||||||  |||||||||||    
T  12820638 attgataaacttttagcaagtgtgctaaaaatatatcgaagtaat 12820682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 165 - 287
Target Start/End: Original strand, 35707735 - 35707857
Alignment:
Q  165 tgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 263  Q
    ||||||||||| ||||||||||||| ||| ||||| |||||||| |||||||||||||||||||| |||||||||| ||| ||||| |||||| ||||||    
T  35707735 tgatgacagagcatcatatgacattttgactatgt-ttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggt 35707833  T
Q  264 ttgaggaacatattgtattgtttt 287  Q
    ||||| ||||| ||||||||||||    
T  35707834 ttgagaaacatgttgtattgtttt 35707857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 21505286 - 21505200
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||||||||||||| ||||||||| |||||||||| ||| ||||| |||||| ||||||||||||| ||||||||||||||||    
T  21505286 ttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgaggagcatattgtattgtttt 21505200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 19949702 - 19949615
Alignment:
Q  201 ttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| |||||||||||||||||||| |||||| ||| ||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  19949702 ttttagtactttttctttgtatttgaagataaataacatgagagattgaggagttgttaatagtttgaggaacatattgtattatttt 19949615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 35031701 - 35031768
Alignment:
Q  232 ataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  35031701 ataagatgagagatagaggagttgttaatggtttgaggaacatattgtattg-ttttcactcgagtcgt 35031768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 25473968 - 25474087
Alignment:
Q  164 ttgatgacagagtatcatatgacattatgaatatgtcttttagtat-ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 262  Q
    |||||||||||| ||||||||||||| ||  ||||| ||||||||  |||| |||  ||||||||| |||||||||| ||| |||||||||||| ||| |    
T  25473968 ttgatgacagagcatcatatgacattttggctatgt-ttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgtcaattg 25474066  T
Q  263 tttgaggaacatattgtattg 283  Q
    |||||||||||||||| ||||    
T  25474067 tttgaggaacatattgaattg 25474087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 30998750 - 30998825
Alignment:
Q  212 ttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||  |||||||| |||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  30998750 ttctttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtattgtttt 30998825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 32619610 - 32619682
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaaca 273  Q
    |||||||| ||||||||| ||||||||| ||||||  || |||||||||||||||||||||||| ||||||||    
T  32619610 ttttagtacttttctttgcatttgaagacaaataacttgagagatagaggagttgttaatggttagaggaaca 32619682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 13971665 - 13971709
Alignment:
Q  322 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  13971665 attgataaacttttagcaagtgtactaaaaatgcatcgaagtaat 13971709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 21843139 - 21843063
Alignment:
Q  211 tttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| ||||||||| ||||||| ||| |  |||||||||||  |||||||| |||||||| ||||||||||||    
T  21843139 tttctttgcatttgaagacaaataagttgtaatttagaggagttgccaatggttttaggaacatgttgtattgtttt 21843063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 21844766 - 21844690
Alignment:
Q  211 tttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| ||||||||| ||||||| ||| |  |||||||||||| |||||||| |||||||| || |||||||||    
T  21844766 tttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttttaggaacatgttatattgtttt 21844690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 287
Target Start/End: Original strand, 1733032 - 1733154
Alignment:
Q  164 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 263  Q
    ||||| ||| || ||||||||||||| |   ||||| |||||||| |||| |||  ||||||||| |||| ||||| ||| |||||||||||| ||||      
T  1733032 ttgataacaaagcatcatatgacattttagttatgt-ttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttgtcaatgag 1733130  T
Q  264 ttgaggaacatattgtattgtttt 287  Q
    ||||| |||| |||||||||||||    
T  1733131 ttgagaaacaaattgtattgtttt 1733154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 31427305 - 31427348
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  31427305 ttgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 31427348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 15829136 - 15829188
Alignment:
Q  235 agatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||| ||| |||||||||||| |||||||||||||||  |||||||||||||    
T  15829136 agatgagagttagaggagttgtcaatggtttgaggaacgcattgtattgtttt 15829188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 19541005 - 19541129
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 298  Q
    |||||||  ||||||||| ||||||||  |||| |||  | | ||| ||||||||||||||||||||||||| | ||||||| | ||||| |||| ||      
T  19541005 ttttagttattttctttgcatttgaaggaaaattagaatttatatataggagttgttaatggtttgaggaactttttgtatt-tatttcaatcgagtcat 19541103  T
Q  299 -gtaattcaattttatcctatatcat 323  Q
     |||||||| |||||||||| |||||    
T  19541104 tgtaattcagttttatcctaaatcat 19541129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 45454215 - 45454172
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||    
T  45454215 ttgatagacttttagcaagtgtactaaatatgcatcgaagtaat 45454172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 6827120 - 6827078
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||||||||| |||||||| |||||| |||||||    
T  6827120 tgataaacttttagcaagtgtactaaaattgcatcaaagtaat 6827078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 18116959 - 18117037
Alignment:
Q  209 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||| |||||||||||||| |||| ||| || |  ||||||| ||| | ||||||||| |||||| ||||||||||||    
T  18116959 tttttttttgtatttgaagacaaatgagaggtcatttagaggatttggtcatggtttgacgaacattttgtattgtttt 18117037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 366
Target Start/End: Original strand, 25820617 - 25820651
Alignment:
Q  332 ttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||| |||||||||||||||||||||||    
T  25820617 ttttagcaagtgtactaaaaatgcatcgaagtaat 25820651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 30720142 - 30720100
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||||||||| ||||||||||  |||||||||||    
T  30720142 tgataaacttttagcaagtgtactaaaaatatatcgaagtaat 30720100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 38460582 - 38460622
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagta 364  Q
    ||||| ||||||||||||| |||||||||| ||||||||||    
T  38460582 tgatagacttttagcaagtgtactaaaaatacatcgaagta 38460622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 45457504 - 45457460
Alignment:
Q  322 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||| | ||||||||||| ||||||| |||||||||||||||    
T  45457504 attgatagatttttagcaagtgtactaaatatgcatcgaagtaat 45457460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 209 - 323
Target Start/End: Complemental strand, 13759590 - 13759474
Alignment:
Q  209 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattc 305  Q
    ||||| |||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||   |||||||    
T  13759590 tttttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaacatattgaattg-ttttcactcgaatcgttgtaattc 13759492  T
Q  306 aattttatcctatatcat 323  Q
    |||||||| |||||||||    
T  13759491 aattttattctatatcat 13759474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 16387395 - 16387308
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttttt 288  Q
    |||||||| |||||||||| ||||||||  |||||||||| |  |||| ||||||| ||||||||||||||  |||||||||||||||    
T  16387395 ttttagtagttttctttgtgtttgaagacgaataagatgtaatttagatgagttgtcaatggtttgaggaatttattgtattgttttt 16387308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 15574852 - 15574978
Alignment:
Q  160 ggttttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 258  Q
    |||| ||||||||||  ||||||||||||| ||  ||| | | |||||| |||||||||| ||||||||| |||||||||| ||  ||||||| |||| |    
T  15574852 ggttatgatgacagaacatcatatgacattttggctatct-tgttagtactttttctttgcatttgaagacaaataagatgagatttagaggaattgtca 15574950  T
Q  259 atggtttgaggaacatattgtattgtttt 287  Q
    || ||||||||||||| || |||||||||    
T  15574951 at-gtttgaggaacatgttatattgtttt 15574978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 323
Target Start/End: Original strand, 16527878 - 16527982
Alignment:
Q  221 tttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatccta 317  Q
    |||||||| |||||||||| ||| ||||||||||||   ||||||||| | |||||| ||||| ||||||||||| ||   |||||||| ||||||||||    
T  16527878 tttgaagacaaataagatgagagttagaggagttgtcggtggtttgagtaccatattatattg-ttttcactcgagtcgttgtaattcatttttatccta 16527976  T
Q  318 tatcat 323  Q
     |||||    
T  16527977 gatcat 16527982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 20495940 - 20495854
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttttt 288  Q
    |||||||| ||||||||||||||||||  || ||||| || | |||||| |||| | ||||||||||||||||| ||| |||||||||    
T  20495940 ttttagtaattttctttgtatttgaaggcaattaagaggtcatatagagaagttatcaatggtttgaggaacattttg-attgttttt 20495854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 30355294 - 30355375
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtatt 282  Q
    |||||||| ||||  ||| ||||||||  |||||||||| ||| ||||| |||||| ||||||||||  |||||||||||||    
T  30355294 ttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttgtcaatggtttgataaacatattgtatt 30355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 32930611 - 32930534
Alignment:
Q  209 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttt 286  Q
    ||||| |||| ||||||||  ||||||||||| |  |||||||||||| ||||||||| ||||||| |||| ||||||    
T  32930611 tttttttttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttgcggaacattttgttttgttt 32930534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 14924564 - 14924492
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaaca 273  Q
    |||||||  ||||||||| ||||||||  |||||| |||| |  |||||||||||| ||||||||||||||||    
T  14924564 ttttagttattttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaaca 14924492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 22262332 - 22262404
Alignment:
Q  215 tttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| ||||| |||||||| || |  |||||||||||| ||||||||||| || |||||||||| ||||    
T  22262332 tttgtattcgaagacaaataagaagtaatttagaggagttgtcaatggtttgagaaaaatattgtattatttt 22262404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 34390190 - 34390230
Alignment:
Q  322 attgataaacttttagcaagtatactaaaaatgcatcgaag 362  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  34390190 attgatacacttttagcaagtatactaaaaatgcattgaag 34390230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 2773155 - 2773198
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||    
T  2773155 ttgatagacttttagcaagtgtactaaaaatgaatcgaagtaat 2773198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 26512924 - 26512826
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    |||||||  |||| |||| ||||||||  |||||||| || |  |||||||||||| ||||||||| | ||||| |||||||| |||||| |||||||||    
T  26512924 ttttagttattttgtttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattg-ttttcattcgattcgt 26512826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 26518040 - 26517942
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    |||||||  |||| |||| ||||||||  |||||||| || |  |||||||||||| ||||||||| | ||||| |||||||| |||||| |||||||||    
T  26518040 ttttagttattttgtttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattg-ttttcattcgattcgt 26517942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 17198853 - 17198816
Alignment:
Q  250 gagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  17198853 gagttgttaatggtttgaggaactttttgtattgtttt 17198816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 177 - 323
Target Start/End: Complemental strand, 22067977 - 22067829
Alignment:
Q  177 atcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacata 275  Q
    ||||||||||||| ||  ||||| |||||||| ||||| |||| ||||||||| |||||||||| ||| || ||||||||| ||||||||||||||||||    
T  22067977 atcatatgacattttggctatgt-ttttagtaatttttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacata 22067879  T
Q  276 ttgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 323  Q
     ||||||| ||||||||||| ||   ||||||||||||||||||| |||||    
T  22067878 atgtattg-ttttcactcgagtcattgtaattcaattttatcctagatcat 22067829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 29544487 - 29544585
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    ||||| || ||||||||| ||||||||| |||||||||| ||| |||||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||    
T  29544487 ttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatattgtattg-ttttcactcgagtcgt 29544585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 315116 - 315234
Alignment:
Q  164 ttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 262  Q
    ||||||| |||||||||||||| ||| ||| ||||| |||  ||| ||||||||  |||||||||| |||||||||| ||| |||||||||||| |||||    
T  315116 ttgatgatagagtatcatatgatattttgactatgt-tttcggtactttttcttaatatttgaagaaaaataagatgagagttagaggagttgtcaatgg 315214  T
Q  263 tttgaggaacatattgtatt 282  Q
    ||||| ||| ||||||||||    
T  315215 tttgaagaatatattgtatt 315234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 23124878 - 23124966
Alignment:
Q  211 tttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    |||||||  ||||||||| |||||||||| ||  |||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||    
T  23124878 tttctttacatttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaacatattgtattg-ttttcactcgagtcgt 23124966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 1255340 - 1255236
Alignment:
Q  221 tttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatccta 317  Q
    |||||||| ||||||| || ||| |||||||||||| |||||||||||||| | ||||||||| ||||||||||| ||   |||||||| ||||||||||    
T  1255340 tttgaagacaaataagttgagagttagaggagttgtcaatggtttgaggaataaattgtattg-ttttcactcgagtcattgtaattcatttttatccta 1255242  T
Q  318 tatcat 323  Q
     |||||    
T  1255241 aatcat 1255236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 20470957 - 20470871
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| |||| ||| ||| |||||| ||||||||||  |  |||||||||||| |||||||||||||||||||| |||||||||    
T  20470957 ttttagtacttttatttatatgtgaagacaaataagatgataattagaggagttgtcaatggtttgaggaacatattatattgtttt 20470871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 9385456 - 9385537
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtatt 282  Q
    |||||| | ||||| ||| ||||||||| || ||||||| ||||||| ||||||||||||||||||| |||| |||||||||    
T  9385456 ttttagcacttttccttgcatttgaagacaattaagatgagagatagtggagttgttaatggtttgatgaacttattgtatt 9385537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 294
Target Start/End: Original strand, 7815257 - 7815383
Alignment:
Q  167 atgacagagtatcatatgacattatgaatatgtcttttagtatttttct-ttgtatttgaagagaaataagatgtgagatagaggagttgttaatggttt 265  Q
    ||||||| ||||||||||| ||| ||  ||||| |||||||| |||| | ||| ||||||||| |||||||||| ||| || |||| |||| ||||||||    
T  7815257 atgacagggtatcatatgatattttggttatgt-ttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggttt 7815355  T
Q  266 gaggaacatattgtattgtttttcactcg 294  Q
     || ||||||||||||| |||||||||||    
T  7815356 aagaaacatattgtatt-tttttcactcg 7815383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 9066119 - 9066214
Alignment:
Q  220 atttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-gtaattcaattttatcc 315  Q
    ||||||||| ||||||| ||  |||||||| |||||| |||| ||| ||||||||||||||||| ||||||||||| || |||||||| ||||||||    
T  9066119 atttgaagacaaataagttgatagatagagaagttgtcaatgtttttaggaacatattgtattg-ttttcactcgagtcggtaattcacttttatcc 9066214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 48645822 - 48645779
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  48645822 ttgataaacttttagcaagtgtactaaaaatgcatcgaagtaat 48645779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 20446215 - 20446293
Alignment:
Q  209 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||||| ||||||||| || ||||||| ||  |||||||||||| |||||||| || |||||||||| |||||||    
T  20446215 tttttctttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaacatattgttttgtttt 20446293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 4595767 - 4595811
Alignment:
Q  322 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  4595767 attgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 4595811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 7142030 - 7142164
Alignment:
Q  165 tgatgacagagtatcatatgacattat-gaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 263  Q
    ||||||||||| ||||||||||||| | |  ||||| ||||| || ||||||||| |||| |||| ||||||| || |||| | | ||||||| ||||||    
T  7142030 tgatgacagagcatcatatgacatttttggctatgt-ttttaatagttttctttgcatttaaagacaaataagttgagagagatatgagttgtcaatggt 7142128  T
Q  264 ttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    || ||||||||||| |||||  |||||||||| ||||    
T  7142129 ttaaggaacatattttattg-ctttcactcgagtcgt 7142164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 21471724 - 21471851
Alignment:
Q  160 ggttttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 258  Q
    |||| ||||||||||| |||||||| |||| ||  ||||| |||||||| |||||| ||| ||||||||| ||||||||||  |  ||||||| |||| |    
T  21471724 ggttgtgatgacagagcatcatatgccattttggttatgt-ttttagtactttttccttgcatttgaagacaaataagatgatatttagaggatttgtca 21471822  T
Q  259 atggtttgaggaacatattgtattgtttt 287  Q
    ||| ||| | ||||||||| |||||||||    
T  21471823 atgattttaagaacatattatattgtttt 21471851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 26808560 - 26808608
Alignment:
Q  390 tgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaat 438  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  26808560 tgtttcaatttctactcgacaatttaattataataaggatttaacaaat 26808608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 30405575 - 30405651
Alignment:
Q  212 ttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttttt 288  Q
    ||||||| ||||||||  |||| ||| || |  |||||||||||||||||||||||||||| | |||||||||||||    
T  30405575 ttctttgcatttgaaggtaaattagaagtcaattagaggagttgttaatggtttgaggaactttttgtattgttttt 30405651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 277
Target Start/End: Original strand, 7494677 - 7494755
Alignment:
Q  199 tcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatatt 277  Q
    |||||||||| ||||||||| | ||||||| ||| | | || |||||| |  |||||||||||||||||||||||||||    
T  7494677 tcttttagtacttttctttgcacttgaagacaaacaggttgagagataaaatagttgttaatggtttgaggaacatatt 7494755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 11397820 - 11397862
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  11397820 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 11397862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 364
Target Start/End: Original strand, 30057911 - 30057953
Alignment:
Q  322 attgataaacttttagcaagtatactaaaaatgcatcgaagta 364  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  30057911 attgataaacttttagcaagtgtattaaaaatgcatcgaagta 30057953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 30057982 - 30058032
Alignment:
Q  388 attgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaat 438  Q
    ||||||||||| |||||||| |||||||||| |||| ||||||||||||||    
T  30057982 attgtttcaatctcaactcgacaatttaattataattaggatttaacaaat 30058032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 21545896 - 21545848
Alignment:
Q  251 agttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  21545896 agttgtcaatggtttgaggaacatattgtattg-ttttcactcgagtcgt 21545848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 287
Target Start/End: Complemental strand, 2632619 - 2632497
Alignment:
Q  165 tgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 263  Q
    ||||||||||||||| ||||| ||| |   ||||| || ||||| |||||||||| |||| ||||  ||||  ||| ||| ||||||||||||| ||| |    
T  2632619 tgatgacagagtatcgtatgatatttttgttatgt-ttatagtactttttctttgcatttaaagactaatagtatgagagttagaggagttgttgatgat 2632521  T
Q  264 ttgaggaacatattgtattgtttt 287  Q
    || |||||||||||||||| ||||    
T  2632520 tttaggaacatattgtattatttt 2632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 2351009 - 2351051
Alignment:
Q  245 tagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||||||||||| |||||||||| ||||| ||||||||||||    
T  2351009 tagaggagttgttcatggtttgagaaacattttgtattgtttt 2351051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 4695835 - 4695793
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| || ||||||||||||||||||||    
T  4695835 tgatagacttttagcaagtgtattaaaaatgcatcgaagtaat 4695793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 366
Target Start/End: Complemental strand, 17731166 - 17731132
Alignment:
Q  332 ttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||| |||||||||||||||||||||||    
T  17731166 ttttagcaagtgtactaaaaatgcatcgaagtaat 17731132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 22952834 - 22952784
Alignment:
Q  388 attgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaat 438  Q
    ||||||||||| | |||| | |||||||||| |||||||||||||||||||    
T  22952834 attgtttcaatctaaacttgacaatttaattataataaggatttaacaaat 22952784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 28952042 - 28952005
Alignment:
Q  245 tagaggagttgttaatggtttgaggaacatattgtatt 282  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  28952042 tagaggagttgtttatggtttgaggaacatattttatt 28952005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 44363726 - 44363685
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  44363726 ttgataaacttttagcaagtgtactaaaaat--atcgaagtaat 44363685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 165 - 323
Target Start/End: Complemental strand, 12424097 - 12423937
Alignment:
Q  165 tgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 263  Q
    ||||||||||| ||||||||| ||| ||  ||||| |||||||| |||||||||| ||||||||| |||||||||| |||| ||||| ||||||||||||    
T  12424097 tgatgacagagcatcatatgatattttggctatgt-ttttagtactttttctttgcatttgaagacaaataagatgagagacagaggcgttgttaatggt 12423999  T
Q  264 ttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 323  Q
    |||||||||||||  ||||| ||||||||||| ||   |||||||| ||||||| || |||||    
T  12423998 ttgaggaacatatgatattg-ttttcactcgagtcattgtaattcagttttatcttagatcat 12423937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 12810290 - 12810376
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| |||||||| ||||| |||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||    
T  12810290 ttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtattgtttt 12810376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 167 - 322
Target Start/End: Original strand, 26657410 - 26657567
Alignment:
Q  167 atgacagagtatcatatgacattat-gaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggttt 265  Q
    |||||| |||||||||||| ||| | || ||||| ||||| || ||||||||| ||||||||| ||||| | || |||||||||||||||| ||||||||    
T  26657410 atgacatagtatcatatgatatttttgactatgt-ttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggttt 26657508  T
Q  266 gaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatca 322  Q
    |||||| ||| ||||||| ||||||||||||||   |||||||| |||||||||| ||||    
T  26657509 gaggaatataatgtattg-ttttcactcgattcgttgtaattcacttttatcctagatca 26657567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 287
Target Start/End: Complemental strand, 8247840 - 8247718
Alignment:
Q  165 tgatgacagagtatcatatgacattatgaatatgtcttttagtat-ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 263  Q
    ||||||||||| ||||||||||||| ||| ||||| ||||| ||  ||||||||| ||||||||| |||||||||| ||| |||||||| | | ||||||    
T  8247840 tgatgacagagcatcatatgacattttgactatgt-ttttaataccttttctttgcatttgaagacaaataagatgagagttagaggagatatcaatggt 8247742  T
Q  264 ttgaggaacatattgtattgtttt 287  Q
    |||||||||||||| |||| ||||    
T  8247741 ttgaggaacatattttattatttt 8247718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 23223383 - 23223478
Alignment:
Q  205 agtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    |||| ||||||||| ||||  ||| || ||||||| ||| |||||||||||| |||||||||||||||| |||||||| |||||||||||||||||    
T  23223383 agtacttttctttgcattttgagacaattaagatgggagttagaggagttgtcaatggtttgaggaacacattgtattttttttcactcgattcgt 23223478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 23519940 - 23519821
Alignment:
Q  164 ttgatgacagagtatcatatgacattatgaatatgtctttt-agtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 262  Q
    ||||||||| || |||||||||| || ||| ||||| |||| |||| |||||||||  |||||||| ||||| |||| ||||||||  |||||||||| |    
T  23519940 ttgatgacaaagcatcatatgaccttttgactatgtttttttagtacttttctttgcttttgaagacaaatatgatgagagatagaaaagttgttaatag 23519841  T
Q  263 tttgaggaacatattgtatt 282  Q
    ||||||||||||||||||||    
T  23519840 tttgaggaacatattgtatt 23519821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 21452003 - 21451877
Alignment:
Q  160 ggttttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 258  Q
    |||| |||||||| || ||||||||||||| ||  ||||| ||||||||  ||||||||| ||||||||| |||||||||| |||||||| ||||||| |    
T  21452003 ggttgtgatgacatagcatcatatgacattttggctatgt-ttttagtacgttttctttgcatttgaagacaaataagatgagagatagaagagttgtca 21451905  T
Q  259 atggtttgaggaacatattgtattgtttt 287  Q
    ||||| | |||||||||||||||| ||||    
T  21451904 atggtat-aggaacatattgtattatttt 21451877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 50047158 - 50047273
Alignment:
Q  210 ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattca 306  Q
    ||||||||| ||||||||| ||||||||||  |  |||||||||||| |||| |||||| |||||||||||||| ||||||||||| ||   ||||||||    
T  50047158 ttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattg-ttttcactcgagtcatggtaattca 50047256  T
Q  307 attttatcctatatcat 323  Q
     |||||||||| |||||    
T  50047257 cttttatcctaaatcat 50047273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 11770130 - 11770017
Alignment:
Q  212 ttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattcaat 308  Q
    ||||||| ||||||||| |||||||||| ||| ||||| | |||| |||||||| ||||||||||||||||| ||||||||||  ||   |||||||| |    
T  11770130 ttctttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaacatattgtattg-ttttcactcgtgtcgttgtaattcact 11770032  T
Q  309 tttatcctatatcat 323  Q
    ||||||||| |||||    
T  11770031 tttatcctaaatcat 11770017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 34381676 - 34381762
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||| || |||| |||| ||||||||  ||||||||||| |  ||||||||||||||||||||||| ||||||||| |||||||||    
T  34381676 ttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttgaagaacatattatattgtttt 34381762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 30675415 - 30675550
Alignment:
Q  165 tgatgacagagtatcatatgacattatgaa-tatgtcttttagtatttttctttgt-atttgaagagaaataagatgtgagatagaggagttgttaatgg 262  Q
    ||||||||||| ||||||||||||| |    ||||| |||||| | |||||||| | ||||| ||| ||||||||||  |  |||||||||||| |||||    
T  30675415 tgatgacagagcatcatatgacattttttgctatgt-ttttagaacttttctttttcatttgtagacaaataagatgaaaattagaggagttgtcaatgg 30675513  T
Q  263 tttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  30675514 tttgaggaacatattgtattg-ttttcactcgagtcgt 30675550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 24903434 - 24903355
Alignment:
Q  209 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttttt 288  Q
    |||||||||| ||||||||| ||||| |||| ||  ||| |||||||| |||| |||||||||||||||||||| |||||    
T  24903434 tttttctttgcatttgaagacaaatatgatgagaattagtggagttgtcaatgatttgaggaacatattgtatttttttt 24903355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 30781735 - 30781814
Alignment:
Q  208 atttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||||||||| ||||||||| |||||||||| ||| ||||||||||||| ||  ||| || || |||||||||||||||    
T  30781735 atttttctttgcatttgaagacaaataagatgagagttagaggagttgttgataattttagaaatatattgtattgtttt 30781814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 25730718 - 25730632
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| ||||||||| ||||||| | |||||||||| ||| |||||| | ||| ||||| ||||||| | ||||||||||||||    
T  25730718 ttttagtacttttctttgcatttgaaaacaaataagatgagagttagagggggtgtcaatggcttgaggagcgtattgtattgtttt 25730632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 21110912 - 21110955
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  21110912 ttgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 21110955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 42022998 - 42022955
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  42022998 ttgataaacttttagcaaatatactaaaaatgcattgaagtaat 42022955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 25266491 - 25266406
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| ||||||||| ||||||||| | | |||||  ||||||||| |||||| |||||| |||  ||||||||||||||||||    
T  25266491 ttttagtacttttctttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgtttt 25266406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 25494582 - 25494540
Alignment:
Q  245 tagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  25494582 tagaggagttgtcaatggtttgaggaacatattgtcttgtttt 25494540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 21550982 - 21550928
Alignment:
Q  245 tagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    ||||||||||||  |||||||||||||||| |||||||| |||||| |||||||||    
T  21550982 tagaggagttgtctatggtttgaggaacattttgtattg-ttttcattcgattcgt 21550928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 2733517 - 2733583
Alignment:
Q  374 tcgtctccacaaaaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatgg 440  Q
    |||||||||||   ||| ||||||| |||||| |  ||||||||| |||||||||||||||||||||    
T  2733517 tcgtctccacagtgattatttcaatctcaacttgaaaatttaattataataaggatttaacaaatgg 2733583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 8435486 - 8435444
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||||||||| ||||||||||  |||||||||||    
T  8435486 tgataaacttttagcaagtgtactaaaaatatatcgaagtaat 8435444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 29642986 - 29643028
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| |||||||||||||| ||||||||    
T  29642986 tgatagacttttagcaagtgtactaaaaatgcattgaagtaat 29643028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 18795158 - 18795235
Alignment:
Q  210 ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||||||| ||||||||  |||||||| || |  ||||||| || | ||||||||||||||||| |||||| |||||    
T  18795158 ttttctttgcatttgaaggaaaataagaggtcatttagaggatttatcaatggtttgaggaacattttgtatcgtttt 18795235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 34732099 - 34732143
Alignment:
Q  322 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||| ||||||||||| ||||||||||| | |||||||||    
T  34732099 attgataaatttttagcaagtgtactaaaaatgaaccgaagtaat 34732143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 17382181 - 17382096
Alignment:
Q  202 tttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||||| |||| |||| ||||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  17382181 tttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgtttt 17382096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 18222461 - 18222585
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 298  Q
    ||||||||||||| ||| |||||||||| |||||||||| ||| |||| ||||||| ||||||||||| |||||||||||||| |||| |||||| ||      
T  18222461 ttttagtatttttatttctatttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtattg-ttttaactcgagtcat 18222559  T
Q  299 -gtaattcaattttatcctatatcat 323  Q
     |||||||| |||||||||| |||||    
T  18222560 tgtaattcacttttatcctaaatcat 18222585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 287
Target Start/End: Complemental strand, 12340191 - 12340075
Alignment:
Q  169 gacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgag 268  Q
    ||||||| ||||||||||||| ||  ||||| |||||||||||| ||||| ||||||||| ||||||| || ||| |||||||||||| |||||||||||    
T  12340191 gacagagcatcatatgacattttggctatgt-ttttagtatttt-ctttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgag 12340094  T
Q  269 gaacatattgtattgtttt 287  Q
    ||||||||| |||| ||||    
T  12340093 gaacatattatattatttt 12340075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 160 - 300
Target Start/End: Original strand, 24841680 - 24841819
Alignment:
Q  160 ggttttgatgacagagtatcatatgacattatgaa-tatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 258  Q
    |||| ||||||||||| ||||||||||||| |    ||||| |||||||| | ||||||| ||||||||| ||||||| |  |||||||||||||| | |    
T  24841680 ggttgtgatgacagagcatcatatgacattttttgctatgt-ttttagtactattctttgcatttgaagacaaataagtttagagatagaggagttttca 24841778  T
Q  259 atggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  24841779 atggtttgaggaacatattgtattg-ttttcactcgagtcgt 24841819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 24517322 - 24517408
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||  ||| ||||| ||||||||| |||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||    
T  24517322 ttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtattgtttt 24517408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 25594839 - 25594753
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| |||| |||| ||||||||| |||||||||| ||| ||||||| || | ||||||||||||||||||||||||||||||    
T  25594839 ttttagtacttttatttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaacatattgtattgtttt 25594753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 15205576 - 15205709
Alignment:
Q  164 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttc-tttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 262  Q
    |||||||||||| ||||||||| ||| ||| ||||| |||||||||||||  |||| |||| || | ||||||||||  || || ||||||||| | |||    
T  15205576 ttgatgacagagcatcatatgatattttgactatgt-ttttagtattttttatttgcatttaaatacaaataagatg--agttaaaggagttgtcagtgg 15205672  T
Q  263 tttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  15205673 tttgaggaacatattgtattg-ttttcactcgagtcgt 15205709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 22229740 - 22229826
Alignment:
Q  164 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagagg 250  Q
    |||||||||||| |||||||| |||| ||  ||||| |||||||| ||||||||| ||||||||| |||||||||| ||||||||||    
T  22229740 ttgatgacagagcatcatatgtcattttggctatgttttttagtacttttctttgcatttgaagacaaataagatgagagatagagg 22229826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 323
Target Start/End: Original strand, 25680527 - 25680688
Alignment:
Q  164 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 263  Q
    |||||||| ||| |||||| |||||| |   |||||||||||||| ||||||||  |  |||||| ||| |||||| ||| ||  ||| || | ||||||    
T  25680527 ttgatgaccgagcatcatacgacattttagctatgtcttttagtaattttctttaaacctgaagacaaaaaagatgagagttattggatttttcaatggt 25680626  T
Q  264 ttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 323  Q
    |||||||||||||||||||| ||||||||||| ||   ||||||||||||||| ||| |||||    
T  25680627 ttgaggaacatattgtattg-ttttcactcgagtcgttgtaattcaattttattctaaatcat 25680688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 30072150 - 30072218
Alignment:
Q  205 agtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaaca 273  Q
    |||| ||||||||| ||||||||| |||||||||| ||  |||||||||||| ||||||||||||||||    
T  30072150 agtacttttctttggatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaaca 30072218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 287
Target Start/End: Complemental strand, 22968025 - 22967903
Alignment:
Q  165 tgatgacagagtatcatatgacattat-gaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 263  Q
    ||||||| ||||||||||||| ||| | |  ||||| |||||||| ||||||||| || | |||| ||||||||||     |||||||||||| ||||||    
T  22968025 tgatgacggagtatcatatgatattttaggctatgt-ttttagtagttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggt 22967927  T
Q  264 ttgaggaacatattgtattgtttt 287  Q
    ||||||||||||||||| ||||||    
T  22967926 ttgaggaacatattgtactgtttt 22967903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 17027495 - 17027581
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| ||||||||| |||| |||| || ||||||| ||| |||||| || || || |||||||||||||||||| ||||||||    
T  17027495 ttttagtacttttctttgcatttaaagacaattaagatgagagttagaggcgtggtcaagggtttgaggaacatattgaattgtttt 17027581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 7625461 - 7625421
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagta 364  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  7625461 tgataaacttttagcaagtgtactaaaaatgcatcgaagta 7625421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 11274478 - 11274391
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgag-gaacatattgtattgtttt 287  Q
    |||||||| ||||||||| |||| ||||  ||||||||  ||||||||  |||||| |||||||||||  ||||||||||||||||||    
T  11274478 ttttagtacttttctttgcatttaaagaccaataagataagagatagatcagttgtcaatggtttgagaaaacatattgtattgtttt 11274391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 16634038 - 16634112
Alignment:
Q  225 aagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 300  Q
    |||| |||||||||| ||| | || ||||||| ||||||||||| |||||||||||||| ||||||||||| ||||    
T  16634038 aagaaaaataagatgagagttggatgagttgtcaatggtttgagaaacatattgtattg-ttttcactcgagtcgt 16634112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 30066679 - 30066636
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  30066679 ttgataaacttttagcaaatgtactaaaaatgcatcgaagtaat 30066636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 4099291 - 4099333
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  4099291 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 4099333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 17695551 - 17695459
Alignment:
Q  195 tatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||| |||||||  ||||||||||||||| ||| |||||||| ||    || ||||||||| |||| ||||||||| || ||||||||||||    
T  17695551 tatgttttttagttattttctttgtatttggagataaataagaggtcgtttaaaggagttgtcaatgatttgaggaatattttgtattgtttt 17695459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 36357105 - 36357065
Alignment:
Q  326 ataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  36357105 ataaacttttaacaagtgtactaaaaatgcatcgaagtaat 36357065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 16622813 - 16622731
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgt 284  Q
    ||||||||||||| |||  ||||||||| ||||| ||   ||| || ||||||||| ||||||||||||||||| |||||||||    
T  16622813 ttttagtattttt-tttacatttgaagacaaatacgaaaagagttaaaggagttgtcaatggtttgaggaacatgttgtattgt 16622731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 7271385 - 7271343
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||    
T  7271385 tgatagacttttagcaagtgtactaaaaatgtatcgaagtaat 7271343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 17944988 - 17944946
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||||||||| ||||||||||  |||||||||||    
T  17944988 tgataaacttttagcaagtgtactaaaaatatatcgaagtaat 17944946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 18239268 - 18239310
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||||||||| || |||||||| |||||||||||    
T  18239268 tgataaacttttagcaagtgtattaaaaatgaatcgaagtaat 18239310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 21332440 - 21332482
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||    
T  21332440 tgatagacttttagcaagtgtactaaaaatgtatcgaagtaat 21332482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 23157935 - 23157849
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||  ||||||||| ||||||||  |||| ||| || |  |||||||||||| ||||||||||||||| | | ||||||||||    
T  23157935 ttttagttattttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcaatggtttgaggaacttttggtattgtttt 23157849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 24411031 - 24410990
Alignment:
Q  246 agaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||||||||| |||||||||||||| || ||||||||||||    
T  24411031 agaggagttgtcaatggtttgaggaaaattttgtattgtttt 24410990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 26330206 - 26330129
Alignment:
Q  210 ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||||||| |||  |||| ||||||| || ||||| ||| |||||| |||||| | ||||| |||||||||||||||    
T  26330206 ttttctttgcattgtaagacaaataagttgagagatggagtagttgtcaatggtctaaggaatatattgtattgtttt 26330129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 366
Target Start/End: Complemental strand, 32838240 - 32838192
Alignment:
Q  319 atcattgataaac-ttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||  ||||||||||| ||||||||||| |||||||||||    
T  32838240 atcattgataaatattttagcaagtgtactaaaaatgtatcgaagtaat 32838192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 164 - 323
Target Start/End: Complemental strand, 1475464 - 1475303
Alignment:
Q  164 ttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 262  Q
    ||||||||| || ||||||||||||| ||  ||||| |||||||| |||||||||| ||||||||   ||||||||| ||| |||||||||| | |||||    
T  1475464 ttgatgacatagcatcatatgacattttggctatgt-ttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagttttcaatgg 1475366  T
Q  263 tttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 323  Q
    ||||||||| ||||||||||  ||||||||||| ||   ||||||||||| ||||||| |||||    
T  1475365 tttgaggaatatattgtatt-attttcactcgagtcgttgtaattcaattatatcctagatcat 1475303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 13911233 - 13911357
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 298  Q
    |||||||| ||||||||||||||||||| || ||||  | |||||||| ||||||| ||||||||||||||||||| |||||| |||||||| || ||      
T  13911233 ttttagtaattttctttgtatttgaagacaagtaagtagagagatagaagagttgtcaatggtttgaggaacatatggtattg-ttttcacttgaatcat 13911331  T
Q  299 -gtaattcaattttatcctatatcat 323  Q
     |||||||| |||||||||| |||||    
T  13911332 tgtaattcacttttatcctagatcat 13911357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 33914709 - 33914622
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttttt 288  Q
    |||||||| ||||||||| |||| |||| |||||||||| ||| || ||||||||| || ||||||||||||||||||||||||||||    
T  33914709 ttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaacatattgtattgttttt 33914622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 18065832 - 18065905
Alignment:
Q  249 ggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgtaattcaattttatcctatatcat 323  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||| |||||||||| |||||    
T  18065832 ggagttgtcaatggtttgagaaacatattgtattg-ttttcactcgagtcgtaattcacttttatcctaaatcat 18065905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 21017845 - 21017931
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||||||||||||| ||||||||| |||||||||| ||| |||||||||||  |||  ||||||||||||||| |||| ||||    
T  21017845 ttttagtatttttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacatattatattatttt 21017931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 11521116 - 11521231
Alignment:
Q  209 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgatt--cgtaattca 306  Q
    |||||| ||| ||||||||| |||||||||| | | | |||||||||| ||||||||||||||||||||||||| ||||| ||| ||||   ||||||||    
T  11521116 tttttcattgcatttgaagaaaaataagatgagcgttggaggagttgtcaatggtttgaggaacatattgtattattttt-acttgatttgtgtaattca 11521214  T
Q  307 attttatcctatatcat 323  Q
     |||||||||| |||||    
T  11521215 gttttatcctagatcat 11521231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 12409426 - 12409512
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| |||| |||||||||||||| ||||||  || |||||| | ||||||| |||||||||| |||||||||||||| ||||    
T  12409426 ttttagtacttttatttgtatttgaagaaaaataacttgggagataaaagagttgtcaatggtttgaagaacatattgtattatttt 12409512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 19219358 - 19219277
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtatt 282  Q
    ||||||||||||||||||  |||||||| |||||||||| ||| ||  |||||||| ||||||||||||| |||||| ||||    
T  19219358 ttttagtatttttctttgcttttgaagataaataagatgagagttattggagttgtcaatggtttgaggagcatattttatt 19219277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 8402738 - 8402611
Alignment:
Q  160 ggttttgatgacagagtatcatatgacattat-gaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 258  Q
    |||| ||||||||||| ||||||||| ||| | || ||||| |||  ||||||  ||||| ||||||||  ||||||||||| |  |||||||||||| |    
T  8402738 ggttgtgatgacagagcatcatatgatattttagactatgtttttatgtattta-ctttgcatttgaaggcaaataagatgtaatttagaggagttgtca 8402640  T
Q  259 atggtttgaggaacatattgtattgtttt 287  Q
    |||||||||||||||  ||||||||||||    
T  8402639 atggtttgaggaacaatttgtattgtttt 8402611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 25919611 - 25919536
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatat 276  Q
    ||||||||  |||||||| ||||||||| |||||||||| ||| |||| || |||| |||||||||||||||||||    
T  25919611 ttttagtacatttctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtttgaggaacatat 25919536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 4780825 - 4780748
Alignment:
Q  209 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||||||||||||| | |||| ||||  || ||||||||| | |||||||||||||| |||||||||||||||||    
T  4780825 tttttctttgtatttgaatacaaatgagataagatatagaggagctcttaatggtttgagg-acatattgtattgtttt 4780748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 10341764 - 10341849
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| |||||| || |||||||   |||||||||||||  |||||||||||| ||||| |||||||||| |||||||||||||    
T  10341764 ttttagtacttttctctgcatttgaaatcaaataagatgtgaattagaggagttgtcaatgg-ttgaggaacaaattgtattgtttt 10341849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 323
Target Start/End: Original strand, 12573224 - 12573382
Alignment:
Q  167 atgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggttt 265  Q
    |||||| || ||||||||||||| ||  ||||| |||||||| |||||||||| ||| ||||| |||||||||| ||| |||| || |||| ||||||||    
T  12573224 atgacaaagcatcatatgacattttggttatgt-ttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggttt 12573322  T
Q  266 gaggaacatattgtattgtttttcactcga---ttcgtaattcaattttatcctatatcat 323  Q
    ||||||    |||||||| |||||||||||    | |||||||| |||||||||| |||||    
T  12573323 gaggaatgctttgtattg-ttttcactcgagacgttgtaattcatttttatcctagatcat 12573382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 323
Target Start/End: Original strand, 13549688 - 13549846
Alignment:
Q  167 atgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggttt 265  Q
    |||||| || ||||||||||||| ||  ||||| |||||||| |||||||||| ||| ||||| |||||||||| ||| |||| || |||| ||||||||    
T  13549688 atgacaaagcatcatatgacattttggttatgt-ttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggttt 13549786  T
Q  266 gaggaacatattgtattgtttttcactcga---ttcgtaattcaattttatcctatatcat 323  Q
    ||||||    |||||||| |||||||||||    | |||||||| |||||||||| |||||    
T  13549787 gaggaatgctttgtattg-ttttcactcgagacgttgtaattcatttttatcctagatcat 13549846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 317
Target Start/End: Original strand, 25883079 - 25883189
Alignment:
Q  209 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattc 305  Q
    |||||| ||| ||||||||| |||||||||| |||  ||| ||||||| |||  ||||||||||||||| ||||| ||||||||||| ||   |||||||    
T  25883079 tttttcattgcatttgaagaaaaataagatgagagtcagaagagttgtcaattttttgaggaacatattatattg-ttttcactcgaatcgttgtaattc 25883177  T
Q  306 aattttatccta 317  Q
    | ||||||||||    
T  25883178 agttttatccta 25883189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 30219750 - 30219793
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  30219750 ttgatagacttttagcaagtttactaaaaatgcatcgaagtaat 30219793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 27415199 - 27415260
Alignment:
Q  261 ggtttgaggaacatattgtattgtttttcactcgattcgtaattcaattttatcctatatcat 323  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||| || |||||    
T  27415199 ggtttaaggaacatattgtattg-ttttcactcgagtcgtaattcacttttatcgtaaatcat 27415260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 21829270 - 21829193
Alignment:
Q  210 ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||| |||| ||||||||  |||||||| || |  |||||||||||| ||||||||||||||||| ||||||| ||||    
T  21829270 ttttatttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttgaggaacattttgtattatttt 21829193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 19304444 - 19304487
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||    
T  19304444 ttgatagacttttagcaagtgtactaaaattgcatcgaagtaat 19304487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 21813498 - 21813541
Alignment:
Q  245 tagaggagttgttaatggtttgaggaacatattgtattgttttt 288  Q
    ||||||||||||||||||||||||| |||| || ||||||||||    
T  21813498 tagaggagttgttaatggtttgagggacattttctattgttttt 21813541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 26297761 - 26297841
Alignment:
Q  245 tagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 323  Q
    |||||||||||||||||||||||| ||| | || ||||| |||||| |||| ||   ||||||||||||||||||| |||||    
T  26297761 tagaggagttgttaatggtttgagaaactttttatattg-ttttcattcgagtcgttgtaattcaattttatcctaaatcat 26297841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 9158357 - 9158315
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||||||||| ||||||||||  |||||||||||    
T  9158357 tgataaacttttagcaagtgtactaaaaataaatcgaagtaat 9158315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 16244325 - 16244283
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||    
T  16244325 tgatagacttttagcaagtgtactaaaaatacatcgaagtaat 16244283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 366
Target Start/End: Original strand, 55034681 - 55034715
Alignment:
Q  332 ttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||| |||||||||||||||||||||||    
T  55034681 ttttagcaagtgtactaaaaatgcatcgaagtaat 55034715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 19264001 - 19263961
Alignment:
Q  245 tagaggagttgttaatggtttgaggaacatattgtattgtt 285  Q
    |||||||||||| ||||||||||||| |||||| |||||||    
T  19264001 tagaggagttgtcaatggtttgaggatcatattatattgtt 19263961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 25261032 - 25260996
Alignment:
Q  330 acttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  25261032 acttttagcaagtgtactaaaaatgcatcaaagtaat 25260996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 52309380 - 52309416
Alignment:
Q  330 acttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  52309380 acttttagcaagtgtactaaaaatgtatcgaagtaat 52309416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 458
Target Start/End: Original strand, 282 - 366
Alignment:
Q  374 tcgtctccacaaaaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatggaggatatgtagagaatat 458  Q
    ||||||||||||| ||||||||||| ||||||||  ||||||||| |||||||||||||| |||| | || ||||||||| ||||    
T  282 tcgtctccacaaagattgtttcaatctcaactcggtaatttaattataataaggatttaaaaaatagcgggtatgtagaggatat 366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 21365 - 21489
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 298  Q
    ||||||| |||||||||| ||||||||| ||||||||| | || || | ||| | | || |||||||||||| |||||||||| ||||||||||| ||      
T  21365 ttttagtgtttttctttgcatttgaagaaaaataagatttaagttatatgagatctaaagggtttgaggaacttattgtattg-ttttcactcgagtcgt 21463  T
Q  299 -gtaattcaattttatcctatatcat 323  Q
     |||||||| |||||||||| |||||    
T  21464 tgtaattcacttttatcctaaatcat 21489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 6164 - 6250
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||||||| ||||||||  |||| || | |||||||||| ||| || | ||||| | |||||||||||||||||| |||||| ||||    
T  6164 ttttagtacttttctttccatttaaacacaaataagatgagagttatatgagttttcaatggtttgaggaacataatgtattatttt 6250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 14293 - 14249
Alignment:
Q  322 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||||||||| |||||||||||||||||||| |||||||||||    
T  14293 attgataaacttgtagcaagtatactaaaaatgtatcgaagtaat 14249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 90128 - 90085
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  90128 ttgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 90085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 286
Target Start/End: Original strand, 446936 - 447058
Alignment:
Q  164 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttc-tttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 262  Q
    |||||||||||| ||||||||| ||| |   ||||| |||||||| ||||| |||  ||||||||| |||||||||| |||   ||||| ||||| |||     
T  446936 ttgatgacagagcatcatatgatatttttgctatgt-ttttagtacttttcctttacatttgaagacaaataagatgagagtctgaggaattgttgatga 447034  T
Q  263 tttgaggaacatattgtattgttt 286  Q
    ||| ||||||||||||||||||||    
T  447035 ttttaggaacatattgtattgttt 447058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 2854 - 2812
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  2854 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 2812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 1304 - 1346
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  1304 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 1346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 27478 - 27436
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  27478 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 27436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 5720 - 5677
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||    
T  5720 ttgatagacttttagcaagtgtactaaaactgcatcgaagtaat 5677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 22692 - 22606
Alignment:
Q  201 ttttagtatttttctttgtatttgaagagaaataagatgtg-agatagaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    |||| ||| |||| |||| ||||||||| ||| ||| |||| ||||| | ||||||||||| ||||||| ||||||||||||||||||    
T  22692 tttttgtacttttatttgcatttgaagacaaacaag-tgtggagataaaagagttgttaattgtttgagtaacatattgtattgtttt 22606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 7605 - 7562
Alignment:
Q  323 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  7605 ttgataaacttttagcaagtgtactaaaaatatatcgaagtaat 7562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 431 - 389
Alignment:
Q  324 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 366  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||    
T  431 tgatagacttttagcaagtgtactaaaaatgcatcgaaataat 389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 10188 - 10253
Alignment:
Q  374 tcgtctccacaaaaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatg 439  Q
    ||||||||||| ||| | ||| | ||| |||||  |||||||||| ||||||||||||||||||||    
T  10188 tcgtctccacataaactatttaatttttaactcaacaatttaattataataaggatttaacaaatg 10253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 58758 - 58799
Alignment:
Q  246 agaggagttgttaatggtttgaggaacatattgtattgtttt 287  Q
    ||||||||||| ||||||||||||||| | ||||||||||||    
T  58758 agaggagttgtcaatggtttgaggaactttttgtattgtttt 58799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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