View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_28 (Length: 461)
Name: NF6641_low_28
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 5439951 - 5440383
Alignment:
| Q |
18 |
catagtggagttgcggaccaaaagttttgtcaatgaatcatgccatgaagggagaaactcacagtcgaacacggggcaccataaactcctgaatgaggaa |
117 |
Q |
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| T |
5439951 |
catagtggagttgcggaccaaaagttttgtcaatgaatcatgccatgaagggagaaactcatagtcgaacacggggcaccataaactcctgaatgaggaa |
5440050 |
T |
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| Q |
118 |
aactaacacactacccacaaaactagcttagcagagcctatacaattaaggtcatgttgtttggctaatatgcataatttagagacattcaattaaacac |
217 |
Q |
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| T |
5440051 |
aactaacacactacccacaaaactagcttagcagagcctatacaattaaggtcacgttgtttggctaatatgcataatttagagacatccaattaaacac |
5440150 |
T |
|
| Q |
218 |
aaaacttattttgctatatttacatctctttaccggtcttccattttctatctgttcatgtatttcttggtgtagctnnnnnnncgtcttgggaaatttt |
317 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
5440151 |
aaaacttattttgctatatttacatatctttaccggtcttcctttttctatctgttcatgtatttcttggtgtagctaaaaaaacgttttgggaaatttt |
5440250 |
T |
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| Q |
318 |
tcggttaaaaaggaaaatatagtaaaatgagtgtgagccccgtgatttatttatttttgttgaaaagggtgcgtgatagccatggaggagaagaatttca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5440251 |
tcggttaaaaaggaaaatatagtaaaatgagtgtgagccccgtgatttatttatttttgttgaaaagggtgcgtgatagccatggaggagaagaatttca |
5440350 |
T |
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| Q |
418 |
ttaaacattgattgtttcttttccaaccctatg |
450 |
Q |
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| T |
5440351 |
ttaaacattgactgtttcttttccaaccctatg |
5440383 |
T |
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