View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_low_30 (Length: 459)

Name: NF6641_low_30
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_low_30
NF6641_low_30
[»] chr8 (1 HSPs)
chr8 (20-443)||(29157267-29157690)
[»] chr2 (9 HSPs)
chr2 (20-174)||(2596226-2596380)
chr2 (20-174)||(2581537-2581691)
chr2 (215-332)||(2583668-2583785)
chr2 (259-388)||(2596498-2596628)
chr2 (20-147)||(2589151-2589278)
chr2 (170-239)||(2596431-2596500)
chr2 (217-278)||(2584987-2585051)
chr2 (170-224)||(2581743-2581797)
chr2 (45-90)||(2584824-2584869)
[»] chr7 (2 HSPs)
chr7 (206-388)||(46769773-46769964)
chr7 (45-133)||(46769615-46769703)
[»] chr3 (2 HSPs)
chr3 (20-122)||(21642431-21642533)
chr3 (20-118)||(21620765-21620863)
[»] chr6 (1 HSPs)
chr6 (29-150)||(30399351-30399472)
[»] chr4 (2 HSPs)
chr4 (28-90)||(35767245-35767307)
chr4 (45-90)||(19359417-19359462)


Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 443
Target Start/End: Original strand, 29157267 - 29157690
Alignment:
Q  20 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 119  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157267 caaagaggactagaattatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 29157366  T
Q  120 tgggatggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttaggttttttcggggacattggaagcaactcacaatttaataattgtt 219  Q
    ||||||| |||||||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29157367 tgggatgattggaggaaaggaagaaatgagctttttggtgctgcaatagctttaggtttcttcggggacattggaagcaactcacaatttaataattgtt 29157466  T
Q  220 ttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatct 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157467 ttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatct 29157566  T
Q  320 ctcttctaatttttcatccaattcaaccattcaactttcagtttttccttgtttcttttatgtaattgtggtttgtgtcatgtcatgggtatatgtctat 419  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29157567 ctcttttaatttttcatccaattcaaccattcaactttcagtttttccttgtttcttttatgtaattgtggtttgtttcatgtcatgggtatatgtctat 29157666  T
Q  420 ggaaagcctattcttcttagttga 443  Q
    ||||||||||||||||||||||||    
T  29157667 ggaaagcctattcttcttagttga 29157690  T

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Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 2596226 - 2596380
Alignment:
Q  20 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 119  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||| ||| ||||| |||||||||  ||||||||||||||||||||||||||     
T  2596226 caaagcggactagaattatcgatgaaatacaatggttctctgccaaggtttatgtcgaaagtttggtttctgacatttagaaagcacgtcaagacattta 2596325  T
Q  120 tgggatggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttag 174  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  2596326 tgggatggttggaggaaaggaagaaaggagctttttggtgctacaatagctttag 2596380  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 2581537 - 2581691
Alignment:
Q  20 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 119  Q
    ||||||||||||||| |||| ||  |||| ||||||||| || |||||||| |||||||||||||||||||  |||||||||||||||||||||||||||    
T  2581537 caaagcggactagaattatccatgaaatagaatggttctttgtcaaggtttatgttgaaagcttggtttctgacatttagaaagcacgtcaagacatttg 2581636  T
Q  120 tgggatggttggaggaaaggaagaaaggaggcttttggtgctgcaatagctttag 174  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  2581637 tgggatggttggaggaaaggaagaaaggagctttttggtgctacaatagctttag 2581691  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 215 - 332
Target Start/End: Original strand, 2583668 - 2583785
Alignment:
Q  215 ttgttttgttttataactcttctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgc 314  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2583668 ttgttttgttttgtaactcttctctttgtttggaaacatgtgaatgtcactaatacatttatgcattttagtccttttccttattcatttatttacatgc 2583767  T
Q  315 catctctcttctaatttt 332  Q
    |||||||||| |||||||    
T  2583768 catctctcttttaatttt 2583785  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 259 - 388
Target Start/End: Original strand, 2596498 - 2596628
Alignment:
Q  259 tgtcactaatacatttatgcattttagtccttttccttattcatttctttacatgccatctctcttctaatttttcatccaattcaaccattcaactttc 358  Q
    |||||||||||||||||||| ||| | ||||||||||| ||||||| ||||||| | ||||||||| |||||||||||||||||||||||||| ||||||    
T  2596498 tgtcactaatacatttatgcctttaaatccttttccttgttcatttttttacattctatctctcttttaatttttcatccaattcaaccattcgactttc 2596597  T
Q  359 agtttttccttgtttctttt-atgtaattgt 388  Q
    ||||||||| |||||||||| ||||||||||    
T  2596598 agtttttccatgtttcttttaatgtaattgt 2596628  T

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Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 2589151 - 2589278
Alignment:
Q  20 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 119  Q
    ||||||||||||||| |||| ||  |||||||||||||||| ||||||||| ||||||||| |||||||||   ||||||||||||||||||||||||||    
T  2589151 caaagcggactagaattatcaatgaaatacaatggttctctaccaaggtttatgttgaaagtttggtttctgatatttagaaagcacgtcaagacatttg 2589250  T
Q  120 tgggatggttggaggaaaggaagaaagg 147  Q
    |||||||||| |||||||  ||||||||    
T  2589251 tgggatggttagaggaaaaaaagaaagg 2589278  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 2596431 - 2596500
Alignment:
Q  170 tttaggttttttcggggacattggaagcaactcacaatttaataattgttttgttttataactcttctgt 239  Q
    ||||||||| ||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  2596431 tttaggtttcttcgaagacatttgaagcaactcacaatgtaataattgttttgttttataactcttctgt 2596500  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 2584987 - 2585051
Alignment:
Q  217 gttttgttttataactctt---ctgtttgtttggaaccatgtgaatgtcactaatacatttatgc 278  Q
    |||||||||||||||||||   |||||||||||||| ||||| |||||||||||| |||||||||    
T  2584987 gttttgttttataactcttcttctgtttgtttggaaacatgtaaatgtcactaattcatttatgc 2585051  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 2581743 - 2581797
Alignment:
Q  170 tttaggttttttcggggacattggaagcaactcacaatttaataattgttttgtt 224  Q
    ||||||||| ||||  |||||| |||||||||||||||||||||||| |||||||    
T  2581743 tttaggtttcttcgaagacatttgaagcaactcacaatttaataatttttttgtt 2581797  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 2584824 - 2584869
Alignment:
Q  45 aatacaatggttctctgccaaggtttttgttgaaagcttggtttct 90  Q
    ||||||||||||||||| ||||| || ||||||||| |||||||||    
T  2584824 aatacaatggttctctgtcaaggcttatgttgaaagtttggtttct 2584869  T

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Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 206 - 388
Target Start/End: Original strand, 46769773 - 46769964
Alignment:
Q  206 atttaataattgttttgttttataactctt---ctgtttgtttggaaccatgtgaatgtcactaatacatttatgcattttagtccttttccttattcat 302  Q
    ||||||||||| ||||||||||||||||||   |||||||||||||| |||||| ||||||||| ||||||||||| ||||||||| | |||||||||||    
T  46769773 atttaataattattttgttttataactcttcttctgtttgtttggaagcatgtggatgtcactagtacatttatgccttttagtccatatccttattcat 46769872  T
Q  303 ttctttacatgccatctctct-----tctaatttttcatccaattcaaccattcaac-tttcagtttttccttgtttcttttatgtaattgt 388  Q
    ||||||| ||| ||||||| |     | ||||||| |||||||||||| |||||||| ||||||||||||||| ||||||  ||||||||||    
T  46769873 ttctttatatgtcatctctattttaatttaattttacatccaattcaatcattcaacttttcagtttttccttctttcttcaatgtaattgt 46769964  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 46769615 - 46769703
Alignment:
Q  45 aatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtgggatggttggag 133  Q
    |||||| |||||||||||||||||||  |||||||| || ||||||  ||||||||||||| ||||||||||||||||||||| |||||    
T  46769615 aatacattggttctctgccaaggtttacgttgaaagttttgtttcttacatttagaaagcatgtcaagacatttgtgggatggctggag 46769703  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 21642533 - 21642431
Alignment:
Q  20 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttg 119  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||    
T  21642533 caaagcggactagaattatcgatgaaatacaatggttctctgccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacatttg 21642434  T
Q  120 tgg 122  Q
    |||    
T  21642433 tgg 21642431  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 21620863 - 21620765
Alignment:
Q  20 caaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacattt 118  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||    
T  21620863 caaagcggactagaattatcgatgaaatacaatggttctctgccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacattt 21620765  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 30399351 - 30399472
Alignment:
Q  29 ctagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgtgggatggt 128  Q
    |||||| |||||||  |||||||||||||||| ||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||| | ||||    
T  30399351 ctagaattatcgatgaaatacaatggttctctaccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacatttgtgcgctggt 30399450  T
Q  129 tggaggaaaggaagaaaggagg 150  Q
    | || ||||||||||| |||||    
T  30399451 tagatgaaaggaagaatggagg 30399472  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 35767245 - 35767307
Alignment:
Q  28 actagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttct 90  Q
    ||||||||||  |||  |||||| ||||||||| ||||||||| ||| |||||||||||||||    
T  35767245 actagaactactgatagaatacactggttctctaccaaggtttatgtcgaaagcttggtttct 35767307  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 19359417 - 19359462
Alignment:
Q  45 aatacaatggttctctgccaaggtttttgttgaaagcttggtttct 90  Q
    |||| |||||||||||| ||||| || |||||||||||||||||||    
T  19359417 aataaaatggttctctgtcaaggcttatgttgaaagcttggtttct 19359462  T

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