View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_31 (Length: 458)
Name: NF6641_low_31
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 50768497 - 50768604
Alignment:
| Q |
182 |
atgacttagtagcttgataaagaaagacaagaggagatttatttatttttgtaacacttctttagtaatgcaaatatttggccttctattggttagcata |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50768497 |
atgacttagtagcttgataaagaaagacaagaggagatttatttatttttgtaacacttctttagtaattcaaatatttggccttctattggttagcata |
50768596 |
T |
|
| Q |
282 |
tcaagatt |
289 |
Q |
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|||||||| |
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| T |
50768597 |
tcaagatt |
50768604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 335 - 444
Target Start/End: Original strand, 50768646 - 50768755
Alignment:
| Q |
335 |
aagtcaatataaattatcatatcctatagattcaaaaagaatcatgtgctctcaacggtatcttgataaagaaagacatagggggataaatataattgta |
434 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
50768646 |
aagtcaatataatttatcatatgctatagattcaaaaagaatcatgtgctctcaacggtagcttgataaagaaagacataggggtataaatataattgta |
50768745 |
T |
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| Q |
435 |
cgaacaaagt |
444 |
Q |
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|||||||||| |
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| T |
50768746 |
cgaacaaagt |
50768755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 26824660 - 26824553
Alignment:
| Q |
182 |
atgacttagtagcttgataaagaaagacaagaggagatttatttatttttgtaacacttctttagtaatgcaaatatttggccttctattggttagcata |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26824660 |
atgacttagtagcttgataaagaaagacaagaggagatttatttatttttgtaacacttctttagtaattcaaatatttggccttctattggttagcata |
26824561 |
T |
|
| Q |
282 |
tcaagatt |
289 |
Q |
| |
|
|||||||| |
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|
| T |
26824560 |
tcaagatt |
26824553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 335 - 444
Target Start/End: Complemental strand, 26824511 - 26824402
Alignment:
| Q |
335 |
aagtcaatataaattatcatatcctatagattcaaaaagaatcatgtgctctcaacggtatcttgataaagaaagacatagggggataaatataattgta |
434 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
26824511 |
aagtcaatataatttatcatatgctatagattcaaaaagaatcatgtgctctcaacggtagcttgataaagaaagacataggggtataaatataattgta |
26824412 |
T |
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| Q |
435 |
cgaacaaagt |
444 |
Q |
| |
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|||||||||| |
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|
| T |
26824411 |
cgaacaaagt |
26824402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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