View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_35 (Length: 437)
Name: NF6641_low_35
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 46484042 - 46483641
Alignment:
| Q |
19 |
ggcggtacgactaaagatggtttatcttaacaacctcatgcttttctaaatccgaattgagaacgagttgtacaatttgaacaaagatattcatcaacgc |
118 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46484042 |
ggcggtacgactaaagatggtttatcttgacaaccccatgcttttctaaatccgaattgagaacgagttgtacaatttgaacaaagatattcatcaacgc |
46483943 |
T |
|
| Q |
119 |
cataaatatcaaagctattcttccaattctatgattcattataaactttcttaatcttaattcttcgattatcaagagaatgagattctgataatcttaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46483942 |
cataaatatcaaagctattcttccaattctatgattcattataaactttcttaatcttaattctccgattatcaagagaatgagattctgataatcttaa |
46483843 |
T |
|
| Q |
219 |
attggttgaatggtcatataaatttcaatcacatctaatttaattatgaaaatattttatagtttccttaatttnnnnnnnnnnnntaagacattctctt |
318 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46483842 |
attggttgaatgatcatataaatttcaatcacatctaatttaattatgaaaatattttatagtttccttaatttaaaaaagaaaaataagacattctctt |
46483743 |
T |
|
| Q |
319 |
tccgctcctttaa-nnnnnnncatcccctcctccacgtattagtcatttgtttgtttcattgaagaaaaaatctgaatcattcaacaacattattgctct |
417 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46483742 |
tccgctactttaattttttttcatcccctcctccacgtattagtcatttgtttgtttcattgaagaaaaaatctgaatcattcaacaacattattgctct |
46483643 |
T |
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| Q |
418 |
tt |
419 |
Q |
| |
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|| |
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| T |
46483642 |
tt |
46483641 |
T |
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