View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_40 (Length: 416)
Name: NF6641_low_40
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 102 - 402
Target Start/End: Original strand, 14148941 - 14149241
Alignment:
| Q |
102 |
ttataattaagaagaaaattcaactgtaatagaataaaccaatcacaagttcgaaaattatattttgttgtgtggtcctttgtgtgttgacattttcatg |
201 |
Q |
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| T |
14148941 |
ttataattaaaaagaaaattcaactataatagaataaaccaatcacaagttggaaaaatatattttgttgtgtggtcccttgtgtgttgacttttctatg |
14149040 |
T |
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| Q |
202 |
caaaataaatcagaatgcagtggtgctttggagcatgcacccttgggaaagagatgcccgtttagcaaaagaggccctaaagaaaggctcaatttcatat |
301 |
Q |
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| T |
14149041 |
taaaatatatcagaatgcagtggtgctttggagcatgcacccttgggaaagagatgcccgtttagcaaaagaggccctaaagaaaggctcaatttcatat |
14149140 |
T |
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| Q |
302 |
ggtgtactgattgagattgcatgcacaagatcttcagaggaactattgggagctaggaaggcataccattcgctctttgaccattccattgaagatgatg |
401 |
Q |
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| T |
14149141 |
ggtgtactgattgagattgcatgcacaagatcttcagaggaactattgggagctaggaaggcataccattccctctttgaccattccattgaagaagatg |
14149240 |
T |
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| Q |
402 |
t |
402 |
Q |
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| T |
14149241 |
t |
14149241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 14148344 - 14148386
Alignment:
| Q |
17 |
acttgtgacttcatgatcttatttagaagacaattagataaaa |
59 |
Q |
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| T |
14148344 |
acttgtgacttcatgatcttacttagaagacaattagataaaa |
14148386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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