View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_41 (Length: 415)
Name: NF6641_low_41
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 62 - 400
Target Start/End: Original strand, 51982912 - 51983259
Alignment:
| Q |
62 |
acaatgcagataccgaatataacatatagtgatacaaaatatatttatattgaactgcatcatgaagcttaaaacaaataaatcatgactcaattgctta |
161 |
Q |
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| T |
51982912 |
acaatgcaggtaccaaatataacatatagtgatacaaaatatatttatgttgaactgcatcatgaagcttaaaacaaataaaccatgactcaattgcata |
51983011 |
T |
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| Q |
162 |
gcattttattattataatattaaaatcaagcaatgcaaatcaaattggtcgcagcaattaaaaagtctatgacaacagcagtagaacagaaatgcaaacc |
261 |
Q |
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| T |
51983012 |
gcattttattattataataataaaatcaagcaatgcaaatcaaattggtcgcagcaattaaaaagtctatggcaacagcagtagaatagaaatgcaaatc |
51983111 |
T |
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| Q |
262 |
gtaactgccaaaaaattatgataataatatatggcactaaaaatggtagt-ctaagtgcttgagtcggttcgagaaaatggggtacgcccacaaa----- |
355 |
Q |
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| T |
51983112 |
gtaactgccaataaattatgataataatatatggcactaaaattggtaatactaagtgcttgagtcggttcgagaaaatggggcacgcccacaaaactga |
51983211 |
T |
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| Q |
356 |
---actgaatttaaaaattatgagcatacatcttcaacctcttgaaag |
400 |
Q |
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| T |
51983212 |
atgactgaatttaaaaattatgagcatacatcttcaacctcttgaaag |
51983259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 25 - 354
Target Start/End: Original strand, 36837655 - 36837983
Alignment:
| Q |
25 |
taacacacatgaagtaagcatgtgatattataaca---ctacaatgcagataccgaatataacatatagtgatacaaaatatatttatattgaactgcat |
121 |
Q |
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| T |
36837655 |
taacacacatgaaataagcatgtgatactaccaccacgcaacaatgcaggtaccaaatataacata--gtgatacaaaatatatatatgttgaactgcat |
36837752 |
T |
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| Q |
122 |
catgaagcttaaaacaaataaatcatgactcaattgcttagcattttattattataatattaaaatcaagcaatgcaaatcaaattggtcgcagcaatta |
221 |
Q |
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| T |
36837753 |
catgaagcttaaaacaaataaaccatgacacaatagcataatattttattattgtaataataaaattaaagaattc-aatcatattagtcgcaacaatt- |
36837850 |
T |
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| Q |
222 |
aaaagtctatgacaacagcagtagaacagaaatgcaaaccgtaactgccaaaaaattatgataataatatatggcactaaaaatggt--agtctaagtgc |
319 |
Q |
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| T |
36837851 |
aaaagtctacgacaacagcagtagaac-taaaaacaaaccgtaacagccaataaattatgattataatgtatggcgctaaaattggttaatgctga-tgc |
36837948 |
T |
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| Q |
320 |
ttgagtcggttcgagaaaatggggtacgcccacaa |
354 |
Q |
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| T |
36837949 |
ttgagtcggttggagaaaatggggcacacccacaa |
36837983 |
T |
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