View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_42 (Length: 413)
Name: NF6641_low_42
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 1780874 - 1781184
Alignment:
| Q |
1 |
actttctcctttccttcacnnnnnnnccttcatctcctctttatacaccgtttaccgttcactggaacgttcaaaaaccccgttcaaagctacgacggaa |
100 |
Q |
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| T |
1780874 |
actttctcctttccttcacaaaaaaaccttcatctcctctttatccaccgtttaccgttcactggaacgttcaaaaaccacgttcaaagctacgacggaa |
1780973 |
T |
|
| Q |
101 |
tcacgccgtgaagttcactagagcaagtcctacaactcctctttcttggtccgccgctaattccgctagtaccgccaccgctaacaccgccggaaccctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1780974 |
tcacgccgtgaagttcactagagcaagtcctacaactcctctttcttggtccgccgctaattccgctagtaccgccaccgctaacaccgccgtaaccctc |
1781073 |
T |
|
| Q |
201 |
gccgacggtaatgaagcatcatccagtcggttcatcaaatcggttcattcttcaagatctaaggttcgatttcgtttccattcagtttttcttcatcttc |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1781074 |
gccgatggtaatgaagcatcatccagtcggttcatcaaatcggttcattcttcaagatctaaggttcgatttcgtttctattcagtttttcttcatcttc |
1781173 |
T |
|
| Q |
301 |
ttctcttccgg |
311 |
Q |
| |
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||||||||||| |
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| T |
1781174 |
ttctcttccgg |
1781184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 1781223 - 1781264
Alignment:
| Q |
322 |
ctcttctggcgtgttttgtttgaacgaaacaaaccagttaag |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
1781223 |
ctcttctggcgtgttttgtttgaacgaaacaaaccagttaag |
1781264 |
T |
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