View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_43 (Length: 406)
Name: NF6641_low_43
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_43 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 50814061 - 50814448
Alignment:
| Q |
19 |
aattctgtcattccttccgacgaaagacgcagcggccacaaccattctctcaaagaggtggaatccactcttcctctcgcagctgatgctccgattcgat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814061 |
aattctgtcattccttccgacgaaagacgcagcggccacaaccattctctcaaagaggtggaatccactcttcctctcgcagctgatgctccgattcgat |
50814160 |
T |
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| Q |
119 |
gaccactcctttacagaccatttcgcctttcgtaaattcttctactccttcatgagcatgcgggataagagtctacccatcctctcgttccagcttaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814161 |
gaccactcctttacagaccatttcgcctttcgtaaattcttctactccttcatgagcatgcgggataagagtctacccatcctctcgttccagcttaatt |
50814260 |
T |
|
| Q |
219 |
ttcgctatagcttcatagacaagaacgatttcaacaatttggtttatgctgcaattacttcaggagttgaaaacctaagcataaatctctgccatcttaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814261 |
gtcgctatagcttcatagacaagaacgatttcaacaatttggtttatgctgcaattacttcaggagttgaaaacctaagcataaatctctgccatcttaa |
50814360 |
T |
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| Q |
319 |
cgaaaccacactgcctcctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaaccaagttcctttc |
406 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50814361 |
cgaaaccacactgccttctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaacgaagttcctttc |
50814448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 50861803 - 50861416
Alignment:
| Q |
19 |
aattctgtcattccttccgacgaaagacgcagcggccacaaccattctctcaaagaggtggaatccactcttcctctcgcagctgatgctccgattcgat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50861803 |
aattctgtcattccttccgacgaaagacgcagcggccacaaccattctctcaaagaggtggaatccactcttcctctcgcagctgatgctccgattcgat |
50861704 |
T |
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| Q |
119 |
gaccactcctttacagaccatttcgcctttcgtaaattcttctactccttcatgagcatgcgggataagagtctacccatcctctcgttccagcttaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50861703 |
gaccactcctttacagaccatttcgcctttcgtaaattcttctactccttcatgagcatgcgggataagagtctacccatcctctcgttccagcttaatt |
50861604 |
T |
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| Q |
219 |
ttcgctatagcttcatagacaagaacgatttcaacaatttggtttatgctgcaattacttcaggagttgaaaacctaagcataaatctctgccatcttaa |
318 |
Q |
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| T |
50861603 |
gtcgctatagcttcatagacaagaacgatttcaacaatttggtttatgctgcaattacttcaggagttgaaaacctaagcataaatctctgccatcttaa |
50861504 |
T |
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| Q |
319 |
cgaaaccacactgcctcctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaaccaagttcctttc |
406 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50861503 |
cgaaaccacactgccttctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaacgaagttcctttc |
50861416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 32 - 406
Target Start/End: Original strand, 39558472 - 39558848
Alignment:
| Q |
32 |
cttccgacgaaagacgcagcggccacaaccattctctcaaagaggtggaatccactcttcctctcgcagctgatgctccgattcgatgaccactccttta |
131 |
Q |
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||||| || |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||||| |
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| T |
39558472 |
cttcctaccaaagacgctgcggccacaaccatcctctcaaagaggtggaagccactcttcctctcgcagctcatactccgattcgatgaccacacctttc |
39558571 |
T |
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| Q |
132 |
cagaccatttcgcctttcgtaaattcttctactccttcatgagcatgcgggataagagtctacccatcctctcgttccagcttaattttcgctatagctt |
231 |
Q |
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||||| |||||||||||||| |||||||||||||||| ||||||||||| ||||||| | ||||||||||||| ||||| ||||||| | || | ||| |
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| T |
39558572 |
cagactatttcgcctttcgtgaattcttctactccttaatgagcatgcgagataagaatttacccatcctctc-ttccaccttaattgtagccactactt |
39558670 |
T |
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| Q |
232 |
catagacaagaacgatttcaacaatttggtttatgctgcaattacttcaggagttgaaaacctaagcataaatctctgccatcttaa---cgaaaccaca |
328 |
Q |
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| | || | |||| || |||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| | ||| ||| | || | |
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| T |
39558671 |
cttctacgactacgacttttacaatttggtatatgctgcaattataggaggagttgaaaacctaagcatcaatctctgcaagtataactccgatatcata |
39558770 |
T |
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| Q |
329 |
ctgcctcctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaaccaagttcctttc |
406 |
Q |
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| T |
39558771 |
ctgcctgctttggttctaactaccaaaaccttgacagtcctcaaattgaagagtgtaacattgaacgaagttcctttc |
39558848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 393
Target Start/End: Original strand, 39558983 - 39559096
Alignment:
| Q |
280 |
aggagttgaaaacctaagcataaatctctgccatcttaacgaaaccacactgcctcctttcattctaactagcaaaaccttgacatccctcaaattgaag |
379 |
Q |
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||||||||||||||||||||| ||||||||||| | |||||||| ||||| |||| ||||||||| |||||||||||| ||||||||||||| |
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| T |
39558983 |
aggagttgaaaacctaagcatcgatctctgccataaatccaaaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaag |
39559082 |
T |
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| Q |
380 |
agggtaacattgaa |
393 |
Q |
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| T |
39559083 |
agggtaacattgaa |
39559096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 50814634 - 50814721
Alignment:
| Q |
319 |
cgaaaccacactgcctcctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaaccaagttcctttc |
406 |
Q |
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|||||||| ||||||| ||||||| ||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
50814634 |
cgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaagttcctttc |
50814721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 406
Target Start/End: Complemental strand, 50861230 - 50861143
Alignment:
| Q |
319 |
cgaaaccacactgcctcctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaaccaagttcctttc |
406 |
Q |
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| T |
50861230 |
cgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaagttcctttc |
50861143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 19371034 - 19370970
Alignment:
| Q |
336 |
ctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaaccaagtt |
400 |
Q |
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||||| |||||||| |||||||||| ||| |||||||||||||||| ||||| | ||||||||| |
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| T |
19371034 |
ctttccttctaacttccaaaaccttggcattcctcaaattgaagaggataacaatcaaccaagtt |
19370970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 388
Target Start/End: Original strand, 31210981 - 31211027
Alignment:
| Q |
342 |
ttctaactagcaaaaccttgacatccctcaaattgaagagggtaaca |
388 |
Q |
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|||||| || |||||||||||||| ||||||||||||||| |||||| |
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| T |
31210981 |
ttctaaataccaaaaccttgacattcctcaaattgaagagcgtaaca |
31211027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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