View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_44 (Length: 406)
Name: NF6641_low_44
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 33275583 - 33275973
Alignment:
| Q |
1 |
cctaaatatgaaatattgttttcattatttttgaaaatgcactcttcctaacttgttttatgatttaccactacaagagtcttcaattttggtagaaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33275583 |
cctaaatatgaaatattgttttcattatttttgaaaatgcattcttcctaacttgttttatgatttaccactacaagagtcttcaattttggtagaaatc |
33275682 |
T |
|
| Q |
101 |
ataaaaattggaagtgttctacgaaatcattgtggcatattatatatgccatggtcccctccacactagggtttttggctcttatggtcttggtgaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33275683 |
ataaaaattggaagtgttctacgaaatcattgtggcatattatatatgccatggtcccctccacactagggtttttggctcttatggtcttggtgaaaag |
33275782 |
T |
|
| Q |
201 |
atgcatatgagcgccacagcgttgtataactgaccttttaagccggcccactataataataattattattccgagcatatatatcactaaagcaatactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33275783 |
atgcatatgagcgccacagcgttgtataactgaccttttaagccggcccactataataataattattattccgagcatatatatcactaaagcaatactt |
33275882 |
T |
|
| Q |
301 |
tccaaat---ttatataaattctctgcttcatttgcatgcgatagaattaattgaaagctccatccaaactcatttatggtttggacttgt |
388 |
Q |
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| T |
33275883 |
tccaaatttattatataaattctctgcttcatttgcatgcgatagaattaattgaaagctccatccaaactcatttatggtttggacttgt |
33275973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 1257899 - 1257855
Alignment:
| Q |
11 |
aaatattgttttcattatttttgaaaatgcactcttcctaacttg |
55 |
Q |
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|||| ||||||| ||||||||| |||||||| ||||||||||||| |
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| T |
1257899 |
aaattttgttttgattattttttaaaatgcattcttcctaacttg |
1257855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 39785126 - 39785090
Alignment:
| Q |
11 |
aaatattgttttcattatttttgaaaatgcactcttc |
47 |
Q |
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|||||||||||||||||||||||||||| || ||||| |
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| T |
39785126 |
aaatattgttttcattatttttgaaaattcattcttc |
39785090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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