View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6641_low_45 (Length: 406)
Name: NF6641_low_45
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_45 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 3337477 - 3337860
Alignment:
| Q |
8 |
attatactatcagggaaatgctgtttatagcgaacaatcacatagcgagaatttcacgagaagtgtttcgcattcccttcgggataattttcatcgtggt |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3337477 |
attatactatcagggaaatgttgtttatagcgaacaatcacatagggagagtttcacgagaagtgtttcgcattcccttcgggataattttcatcgtggt |
3337576 |
T |
|
| Q |
108 |
atatagcactgctaattatatcatcaggaataacccataatttatatctgcacacaaaacttgatagtgttggacgtgaagtattggttggtaaaactca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3337577 |
atatagcactgctaattatatcatcaggaataacccataatttatatctgcacacaaaacttgatagtgttggacgtgaagtattagttggtaaaactca |
3337676 |
T |
|
| Q |
208 |
aatctcacggagaataaaaattatattttagatgagtttatatcaacaatgacaactctaatctttcaagtcaattttttaaggatgaatagtgttttag |
307 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3337677 |
aatctcacatagaataaaaattatattttagatgagtttatatcaacaatgacaactcttatctttcaagtcaattttttaaggatgaatagtgttttag |
3337776 |
T |
|
| Q |
308 |
atgagtttacaaaagtaattaacctcttattttacaggtcgattttataactataataacatttgttttatatgcggtactttt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3337777 |
atgagtttacaaaagtaattaacctcttattttacaggtcgattttataactataataacatttgttttatatgcggtactttt |
3337860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University