View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_47 (Length: 402)
Name: NF6641_low_47
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 15073011 - 15073378
Alignment:
| Q |
16 |
gttctcacttaaaccaaccaccaaaaaaggtatagatctatctcaaattctcaatcttcaaagcactgacacagacaccggacacgagattgatactaac |
115 |
Q |
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| T |
15073011 |
gttctcacttaaaccaaccaccaaaaaaggtatagatctatctcaaattctcaatcttcaaagccctgacacaaacaccggacacgagattgatactaac |
15073110 |
T |
|
| Q |
116 |
acacaaaagtgattgaatgtataattagaagtatctggtgtctgaggtgtcttgtcagacaccagatacaaaatggctttaatctaaagtgttggtgcta |
215 |
Q |
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| T |
15073111 |
acacaaaagtgattgaatgtataattagaagtatctggtgtctgaggtgtcttgtcagacaccagatacaatatggctttaatctaaagtgttggtgcta |
15073210 |
T |
|
| Q |
216 |
catagatcacaaatgacacatacacccagagactatattgacacaattttttaacttaagaaaatgaaagtgattgaatgtagtcacatgtatcagtgtc |
315 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15073211 |
catagatcacaaatgacacatacacccagagactacattgacacaattttttaacttaagaaaatgaaagtgattgaatgtagtcacatgtatcagtgtc |
15073310 |
T |
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| Q |
316 |
ttgtcagacaccaaatataactttaatatgaagtgttgatgctacatagatcacagtgatatcttcac |
383 |
Q |
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| T |
15073311 |
ttgtcagacaccaaatataactttaatatgaagtgttgatgctacatagatcacagtgatatcttcac |
15073378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 18725252 - 18725224
Alignment:
| Q |
194 |
ttaatctaaagtgttggtgctacatagat |
222 |
Q |
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| T |
18725252 |
ttaatctaaagtgttggtgctacatagat |
18725224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 9300451 - 9300412
Alignment:
| Q |
276 |
aaaatgaaagtgattgaatgtagtcacatgtatcagtgtc |
315 |
Q |
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| T |
9300451 |
aaaatgaaagtaattgaatgtaatcacatgtatcagtgtc |
9300412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 306
Target Start/End: Complemental strand, 41953209 - 41953175
Alignment:
| Q |
272 |
taagaaaatgaaagtgattgaatgtagtcacatgt |
306 |
Q |
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| T |
41953209 |
taagaaaatgaaagtgattgaatgtaatcacatgt |
41953175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 12365374 - 12365338
Alignment:
| Q |
270 |
cttaagaaaatgaaagtgattgaatgtagtcacatgt |
306 |
Q |
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| T |
12365374 |
cttaagaaaatggaagtgattgaatttagtcacatgt |
12365338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 32862801 - 32862753
Alignment:
| Q |
271 |
ttaagaaaatgaaagtgattgaatgtagtcacatgtatcagtgtcttgt |
319 |
Q |
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||||||||||||||||||||||||||| ||| ||| ||||| |||||| |
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| T |
32862801 |
ttaagaaaatgaaagtgattgaatgtaaccacgtgtgtcagtatcttgt |
32862753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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