View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_low_56 (Length: 379)

Name: NF6641_low_56
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_low_56
NF6641_low_56
[»] chr4 (21 HSPs)
chr4 (1-234)||(13631816-13632051)
chr4 (321-372)||(11816622-11816673)
chr4 (321-372)||(31081571-31081622)
chr4 (323-372)||(50281821-50281870)
chr4 (255-372)||(13631669-13631786)
chr4 (321-372)||(26280212-26280263)
chr4 (322-365)||(44183681-44183724)
chr4 (321-372)||(45044507-45044558)
chr4 (329-372)||(45045156-45045199)
chr4 (322-372)||(11108432-11108482)
chr4 (322-372)||(50282800-50282850)
chr4 (331-372)||(44182711-44182752)
chr4 (321-365)||(9091564-9091608)
chr4 (321-372)||(24297024-24297075)
chr4 (329-363)||(26281128-26281162)
chr4 (321-372)||(9087228-9087279)
chr4 (321-372)||(40680604-40680655)
chr4 (329-372)||(43630189-43630232)
chr4 (256-301)||(13630174-13630219)
chr4 (256-305)||(44182634-44182683)
chr4 (329-365)||(11816008-11816044)
[»] chr7 (11 HSPs)
chr7 (321-372)||(16956069-16956120)
chr7 (321-372)||(30474415-30474466)
chr7 (322-372)||(14682037-14682087)
chr7 (322-372)||(17238506-17238556)
chr7 (323-372)||(25444947-25444996)
chr7 (321-372)||(17236202-17236253)
chr7 (321-372)||(17278538-17278589)
chr7 (321-372)||(18297293-18297344)
chr7 (321-372)||(14682861-14682912)
chr7 (321-372)||(30475038-30475089)
chr7 (321-359)||(8684857-8684895)
[»] chr5 (13 HSPs)
chr5 (321-372)||(37192340-37192391)
chr5 (321-372)||(38385669-38385720)
chr5 (321-372)||(42766956-42767007)
chr5 (322-363)||(24042556-24042597)
chr5 (321-372)||(13824513-13824564)
chr5 (321-372)||(24041877-24041928)
chr5 (321-363)||(19797803-19797845)
chr5 (322-363)||(13823840-13823881)
chr5 (321-372)||(23082677-23082728)
chr5 (321-372)||(38385007-38385058)
chr5 (330-365)||(37191742-37191777)
chr5 (321-363)||(6794656-6794698)
chr5 (329-362)||(16920150-16920183)
[»] chr1 (15 HSPs)
chr1 (321-372)||(24508348-24508399)
chr1 (321-372)||(52751430-52751481)
chr1 (321-372)||(50123834-50123885)
chr1 (323-372)||(50124469-50124518)
chr1 (329-364)||(29022436-29022471)
chr1 (321-372)||(31697254-31697305)
chr1 (329-372)||(51241871-51241914)
chr1 (323-363)||(969043-969083)
chr1 (329-365)||(31698160-31698196)
chr1 (321-372)||(36142249-36142300)
chr1 (329-372)||(51242845-51242888)
chr1 (322-372)||(49652538-49652588)
chr1 (256-301)||(36142182-36142227)
chr1 (256-292)||(1524081-1524117)
chr1 (256-292)||(29022499-29022535)
[»] chr3 (5 HSPs)
chr3 (321-365)||(33389313-33389357)
chr3 (321-372)||(54834070-54834121)
chr3 (322-372)||(52255398-52255448)
chr3 (321-372)||(34817470-34817521)
chr3 (329-372)||(46921927-46921970)
[»] chr2 (13 HSPs)
chr2 (321-372)||(8892929-8892980)
chr2 (321-372)||(29519297-29519348)
chr2 (323-363)||(10709241-10709281)
chr2 (321-372)||(8029877-8029928)
chr2 (321-372)||(12601376-12601427)
chr2 (321-372)||(12602465-12602516)
chr2 (329-372)||(16330706-16330749)
chr2 (321-372)||(20685767-20685818)
chr2 (322-365)||(29519921-29519964)
chr2 (321-372)||(8885797-8885848)
chr2 (321-372)||(10708265-10708316)
chr2 (321-372)||(18950875-18950926)
chr2 (321-372)||(28189586-28189637)
[»] chr6 (6 HSPs)
chr6 (322-372)||(10998864-10998914)
chr6 (321-372)||(901558-901609)
chr6 (329-372)||(8850365-8850408)
chr6 (321-372)||(12261358-12261409)
chr6 (321-372)||(27128983-27129034)
chr6 (256-305)||(10998796-10998845)
[»] chr8 (3 HSPs)
chr8 (322-363)||(13364189-13364230)
chr8 (322-363)||(44553268-44553309)
chr8 (321-372)||(13462244-13462295)
[»] scaffold0202 (1 HSPs)
scaffold0202 (321-372)||(22074-22125)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 8e-80; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 13632051 - 13631816
Alignment:
Q  1 cttcccaattctttatggtcctataataatcatccttgttgtacaggcccccttccagcaacatgtacgatctgaatgcatttacctgtcgcggtcatcc 100  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13632051 cttcccaattctttatggtcctataataatcatccttgt---acaggcccacttccagcaacatgtgcgatctgaatgcatttacctgtcgcggtcatcc 13631955  T
Q  101 atcc------aatccaataaaataattaaagtaatcaaagtcaacactattgggttattattgcaataaatgatttaacttaaagaatgttaataaaagg 194  Q
    ||||      ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||    
T  13631954 atccgattccaatccaatacaataattaaagtaatcaaagtcaactctattgggttattattgcaaaaactgatttaacttaaa-aatgttaataaaagg 13631856  T
Q  195 cgtaaatcagtttttggtcctttaaatatttatttgatat 234  Q
    | |||||  ||||||||||| |||| ||||||||||||||    
T  13631855 cttaaatgcgtttttggtcccttaagtatttatttgatat 13631816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 11816673 - 11816622
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11816673 cgttaggatttatattattcatcttcttccttctccttccatcatcttcttc 11816622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 31081622 - 31081571
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  31081622 cgttagggtttatattattcatctttttccttctccttccatcattttcttc 31081571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 50281821 - 50281870
Alignment:
Q  323 ttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  50281821 ttagggtttatattattcatcttcttccttctccttccatcatcttcttc 50281870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 372
Target Start/End: Complemental strand, 13631786 - 13631669
Alignment:
Q  255 cgtttaagtactttatttttatttccgttacctgtttttgtcatttctgttnnnnnnnnnnnnnnncgttaggatttatattattcatcttcttccttct 354  Q
    ||||| |||| ||||| ||||||||||||||||||||| ||| ||||||||               ||||||| |||| |||||||||||||||||||||    
T  13631786 cgtttgagtaatttatctttatttccgttacctgttttggtcctttctgttaaaaaaattcaaaaacgttagggtttacattattcatcttcttccttct 13631687  T
Q  355 ccttccatcattttcttc 372  Q
    ||||||||||| ||||||    
T  13631686 ccttccatcatcttcttc 13631669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 26280212 - 26280263
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||    
T  26280212 cgttagggtttttattattcatcttcttccttctccttccatcatcttcttc 26280263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 322 - 365
Target Start/End: Complemental strand, 44183724 - 44183681
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatcat 365  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  44183724 gttagggtttatattattcatcttcttccttctccttccatcat 44183681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 45044507 - 45044558
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| ||||||    
T  45044507 cgttagggtttatattattcatcttcttccttatccttccatcatcttcttc 45044558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 45045199 - 45045156
Alignment:
Q  329 tttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  45045199 tttatattattcatcttcttccttctccttccatcatcttcttc 45045156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 11108432 - 11108482
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  11108432 gttagggtttatattattcatcttcttccttctccttccatcctcttcttc 11108482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 50282850 - 50282800
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| ||||||    
T  50282850 gttagggtttatattattgatcttcttccttctccttccatcatcttcttc 50282800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 44182711 - 44182752
Alignment:
Q  331 tatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  44182711 tatattattcatcttcttccttctccttccatcatcttcttc 44182752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 9091564 - 9091608
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcat 365  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  9091564 cgttagggtttatattattcatcttcttccttctccttccttcat 9091608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 24297075 - 24297024
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| | ||||||    
T  24297075 cgttaggatttatattattcatcttcttcattctccttctatcctcttcttc 24297024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 363
Target Start/End: Complemental strand, 26281162 - 26281128
Alignment:
Q  329 tttatattattcatcttcttccttctccttccatc 363  Q
    |||||||||||||||||||||||||||||||||||    
T  26281162 tttatattattcatcttcttccttctccttccatc 26281128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 9087279 - 9087228
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||| ||| ||||| ||||||    
T  9087279 cgttaggctttgtattattcatcttcttccttctctttctatcatcttcttc 9087228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 40680604 - 40680655
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| | ||||||    
T  40680604 cgttaggctttgtattattcatcttcttccttctctttccatcctcttcttc 40680655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 43630232 - 43630189
Alignment:
Q  329 tttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||    
T  43630232 tttatattattcatcttcttcattctccttccatcctcttcttc 43630189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 13630174 - 13630219
Alignment:
Q  256 gtttaagtactttatttttatttccgttacctgtttttgtcatttc 301  Q
    ||||||||||||||| ||||| ||| ||||||||||| ||||||||    
T  13630174 gtttaagtactttatctttatctccattacctgttttggtcatttc 13630219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 44182634 - 44182683
Alignment:
Q  256 gtttaagtactttatttttatttccgttacctgtttttgtcatttctgtt 305  Q
    |||| |||||||||| ||||| ||||||||||||||| ||| ||||||||    
T  44182634 gtttgagtactttatctttatctccgttacctgttttggtcctttctgtt 44182683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 11816008 - 11816044
Alignment:
Q  329 tttatattattcatcttcttccttctccttccatcat 365  Q
    |||||||||||||||||||||||| || |||||||||    
T  11816008 tttatattattcatcttcttccttttctttccatcat 11816044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 16956069 - 16956120
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16956069 cgttagggtttatattattcatcttcttccttctccttccatcattttcttc 16956120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 30474415 - 30474466
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| |||||||||||||||||||| |||||||||||||||| ||||||    
T  30474415 cgttagggtttatattattcatcttcttgcttctccttccatcatattcttc 30474466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 14682037 - 14682087
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| ||||||    
T  14682037 gttagggtttatattattcatcttcttccttctccttctatcatcttcttc 14682087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 17238556 - 17238506
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  17238556 gttagggtttatattattcatcttcttccttctccttccagcatcttcttc 17238506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 25444996 - 25444947
Alignment:
Q  323 ttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  25444996 ttagggtttatattattcatcttcttccttctccttccatcctcttcttc 25444947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 17236202 - 17236253
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||| ||||||    
T  17236202 cgttagggtttatattattcatcttcttccttctttttccatcatcttcttc 17236253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 17278538 - 17278589
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||    
T  17278538 cgttagggtttgtattattcatcttcttccttctctttccatcatcttcttc 17278589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 18297293 - 18297344
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| | ||||||    
T  18297293 cgttagggtttgtattattcatcttcttccttctccttccatcctcttcttc 18297344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 14682912 - 14682861
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| |||||||| ||||||||||||||| ||||| |||||| ||||||    
T  14682912 cgttagggtttatatttttcatcttcttccttatcctttcatcatcttcttc 14682861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 30475089 - 30475038
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||||||| || |||| ||||||| ||||||    
T  30475089 cgttagggtttatattattcatcttcttctttatcctcccatcatcttcttc 30475038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 8684857 - 8684895
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttc 359  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  8684857 cgttagggtttgtattattcatcttcttccttctccttc 8684895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 37192391 - 37192340
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  37192391 cgttagggtttatattattcatcttcttccttctccttccatcatcttcttc 37192340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 38385720 - 38385669
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  38385720 cgttagggtttatattattcatcttcttccttctccttccatcatcttcttc 38385669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 42766956 - 42767007
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  42766956 cgttagggtttatattattcatcttcttccttctccttccatcatcttcttc 42767007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 24042597 - 24042556
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24042597 gttaggatttatattattcatcttcttccttctccttccatc 24042556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 13824564 - 13824513
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  13824564 cgttagggtttatattattcatcttcttccttctccttccatcctcttcttc 13824513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 24041877 - 24041928
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  24041877 cgttagggtttatattattcatcttcttccttctccttccatcctcttcttc 24041928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 19797803 - 19797845
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatc 363  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  19797803 cgttagggtttatattattcatcttcttccttctccttccatc 19797845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 13823840 - 13823881
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatc 363  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  13823840 gttagggtttatattattcatcttcttccttctccttccatc 13823881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 23082677 - 23082728
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||    
T  23082677 cgttaggctttgtattattcatcttcttccttctctttccatcatcttcttc 23082728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 38385007 - 38385058
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| |||||||||||||||||||||||| || ||||||||| ||||||    
T  38385007 cgttagggtttatattattcatcttcttccttatctttccatcatcttcttc 38385058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 330 - 365
Target Start/End: Original strand, 37191742 - 37191777
Alignment:
Q  330 ttatattattcatcttcttccttctccttccatcat 365  Q
    |||||||||||||||||||||||||| |||||||||    
T  37191742 ttatattattcatcttcttccttctctttccatcat 37191777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 6794698 - 6794656
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatc 363  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||    
T  6794698 cgttagggtttgtattattcatcttcttccttctctttccatc 6794656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 362
Target Start/End: Original strand, 16920150 - 16920183
Alignment:
Q  329 tttatattattcatcttcttccttctccttccat 362  Q
    ||||||||||||||||||||||||||| ||||||    
T  16920150 tttatattattcatcttcttccttctctttccat 16920183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 24508348 - 24508399
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  24508348 cgttaggattcatattattcatcttcttccttctccttccatcatcttcttc 24508399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 52751481 - 52751430
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  52751481 cgttaggaattatattattcatcttcttccttctccttccatcatcttcttc 52751430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 50123834 - 50123885
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  50123834 cgttagggtttatattattcatctttttccttctccttccatcatcttcttc 50123885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 50124518 - 50124469
Alignment:
Q  323 ttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||||    
T  50124518 ttaggatttatattattcatcttcttccttatccttctatcatcttcttc 50124469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 329 - 364
Target Start/End: Complemental strand, 29022471 - 29022436
Alignment:
Q  329 tttatattattcatcttcttccttctccttccatca 364  Q
    ||||||||||||||||||||||||||||||||||||    
T  29022471 tttatattattcatcttcttccttctccttccatca 29022436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 31697254 - 31697305
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| | ||||||    
T  31697254 cgttagggtttatattatttatcttcttccttctccttccatcctcttcttc 31697305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 51241871 - 51241914
Alignment:
Q  329 tttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    
T  51241871 tttatattattcatcttcttccttctccttccatcctcttcttc 51241914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 969083 - 969043
Alignment:
Q  323 ttaggatttatattattcatcttcttccttctccttccatc 363  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  969083 ttagggtttatattatttatcttcttccttctccttccatc 969043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 31698196 - 31698160
Alignment:
Q  329 tttatattattcatcttcttccttctccttccatcat 365  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31698196 tttatattattcatcttcttccttctcctttcatcat 31698160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 36142249 - 36142300
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| | ||||||    
T  36142249 cgttagggtttgtattattcatcttcttccttctctttccatcctcttcttc 36142300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 51242888 - 51242845
Alignment:
Q  329 tttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||||||||||||||||||||||| |||||||| | ||||||    
T  51242888 tttatattattcatcttcttccttcttcttccatcctcttcttc 51242845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 49652538 - 49652588
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||| ||| |||||||||||||| |||||||||||||||| | ||||||    
T  49652538 gttagggtttgtattattcatcttcatccttctccttccatcctcttcttc 49652588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 36142182 - 36142227
Alignment:
Q  256 gtttaagtactttatttttatttccgttacctgtttttgtcatttc 301  Q
    ||||||||||||||| ||||| ||||||||||||||| ||| ||||    
T  36142182 gtttaagtactttatctttatctccgttacctgttttggtcctttc 36142227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 1524081 - 1524117
Alignment:
Q  256 gtttaagtactttatttttatttccgttacctgtttt 292  Q
    |||| |||||||||| |||||||||||||||||||||    
T  1524081 gtttgagtactttatctttatttccgttacctgtttt 1524117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 29022535 - 29022499
Alignment:
Q  256 gtttaagtactttatttttatttccgttacctgtttt 292  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  29022535 gtttaagtactttatctttatctccgttacctgtttt 29022499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 33389313 - 33389357
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcat 365  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  33389313 cgttagggtttatattattcatcttcttccttctccttccatcat 33389357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 54834070 - 54834121
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| ||||||    
T  54834070 cgttagggtttatattattcatcttcttccttatccttccatcatattcttc 54834121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 52255448 - 52255398
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||| ||||||| |||||||||||| |||||||||||||||| ||||||    
T  52255448 gttagggtttatatcattcatcttctttcttctccttccatcatcttcttc 52255398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 34817470 - 34817521
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| |||||||||||||||||||||||||| |||| | ||||||    
T  34817470 cgttagggtttgtattattcatcttcttccttctcctttcatcctcttcttc 34817521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 46921970 - 46921927
Alignment:
Q  329 tttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||||||||||| |||||||||||||||||||| | ||||||    
T  46921970 tttatattattcatattcttccttctccttccatcctcttcttc 46921927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 8892980 - 8892929
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  8892980 cgttagggtttatattattcatcttcttccttctccttccatcctcttcttc 8892929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 29519297 - 29519348
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||    
T  29519297 cgttagggtttatattatttatcttcttccttctccttccatcatcttcttc 29519348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 10709281 - 10709241
Alignment:
Q  323 ttaggatttatattattcatcttcttccttctccttccatc 363  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  10709281 ttagggtttatattattcatcttcttccttctccttccatc 10709241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 8029928 - 8029877
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||    
T  8029928 cgttaggttttgtattattcatcttcttccttctctttccatcatcttcttc 8029877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 12601376 - 12601427
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| | ||||||    
T  12601376 cgttagggtttatattattcatcttcttcattctccttccatcctcttcttc 12601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 12602516 - 12602465
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| |||||||||||||||||||||||||||||| |||| | ||||||    
T  12602516 cgttagggtttatattattcatcttcttccttctcctttcatcctcttcttc 12602465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 16330749 - 16330706
Alignment:
Q  329 tttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    
T  16330749 tttatattattcatcttcttccttctccttccatcctcttcttc 16330706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 20685767 - 20685818
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| | ||||||    
T  20685767 cgttaggatttgtattattcatcttcttccttctctttccatcctcttcttc 20685818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 322 - 365
Target Start/End: Complemental strand, 29519964 - 29519921
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatcat 365  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  29519964 gttagggtttatattattcatcttcttccttctctttccatcat 29519921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 8885797 - 8885848
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||| | ||||||    
T  8885797 cgttagggtttatattattcatctttttccttcaccttccatcctcttcttc 8885848  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 10708265 - 10708316
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| |||| |||||||||||||||||||||||||| | ||||||    
T  10708265 cgttagggtttgtattgttcatcttcttccttctccttccatcctcttcttc 10708316  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 18950875 - 18950926
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||||||||||||||||  || |||||||||||| ||||||    
T  18950875 cgttagggtttatattattcatcttcttttttatccttccatcatcttcttc 18950926  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 28189586 - 28189637
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| | ||||||    
T  28189586 cgttagggtttgtattattcatcttcttccttctctttccatcctcttcttc 28189637  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 10998864 - 10998914
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  10998864 gttagggtttatgttattcatcttcttccttctccttccatcatcttcttc 10998914  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 901558 - 901609
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||| ||||||    
T  901558 cgttagggtttatatcattcatcttcttccttcttcttccatcatcttcttc 901609  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 8850365 - 8850408
Alignment:
Q  329 tttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  8850365 tttatattattcatcttcttccttatccttccatcatcttcttc 8850408  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 12261409 - 12261358
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| | ||||||    
T  12261409 cgttaggctttgtattattcatcttcttccttctctttccatcctcttcttc 12261358  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 27128983 - 27129034
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| |||||||||| |||||||||||| ||||||||| ||||||    
T  27128983 cgttagggtttgtattattcatgttcttccttctctttccatcatcttcttc 27129034  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 10998796 - 10998845
Alignment:
Q  256 gtttaagtactttatttttatttccgttacctgtttttgtcatttctgtt 305  Q
    |||| |||||||||||||||| ||||||||||||||| |||  |||||||    
T  10998796 gtttgagtactttatttttatctccgttacctgttttggtctcttctgtt 10998845  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 13364189 - 13364230
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatc 363  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  13364189 gttagggtttatattattcatcttcttccttctccttccatc 13364230  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 44553268 - 44553309
Alignment:
Q  322 gttaggatttatattattcatcttcttccttctccttccatc 363  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  44553268 gttagggtttatattattcatcttcttccttctccctccatc 44553309  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 13462244 - 13462295
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||| ||| ||||| ||||||    
T  13462244 cgttaggctttgtattattcatcttcttccttctctttcaatcatcttcttc 13462295  T

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Target: scaffold0202 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 22125 - 22074
Alignment:
Q  321 cgttaggatttatattattcatcttcttccttctccttccatcattttcttc 372  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| | ||||||    
T  22125 cgttagggtttttattattcatcttcttccttctccttccatcctcttcttc 22074  T

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