View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_low_57 (Length: 378)

Name: NF6641_low_57
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_low_57
NF6641_low_57
[»] chr2 (5 HSPs)
chr2 (16-367)||(44243814-44244183)
chr2 (222-262)||(17117405-17117445)
chr2 (224-262)||(15457768-15457806)
chr2 (224-262)||(21746991-21747029)
chr2 (222-262)||(38985469-38985508)
[»] chr7 (2 HSPs)
chr7 (225-262)||(1366276-1366313)
chr7 (222-262)||(26282292-26282332)
[»] chr8 (1 HSPs)
chr8 (222-262)||(34523714-34523754)
[»] chr5 (5 HSPs)
chr5 (222-262)||(43511885-43511925)
chr5 (224-262)||(3349489-3349527)
chr5 (225-262)||(10591035-10591072)
chr5 (221-258)||(20976245-20976282)
chr5 (222-263)||(41612987-41613028)
[»] chr6 (5 HSPs)
chr6 (222-261)||(1690478-1690517)
chr6 (222-259)||(29308230-29308267)
chr6 (222-262)||(1092801-1092841)
chr6 (224-260)||(7926409-7926445)
chr6 (222-262)||(31861251-31861291)
[»] chr4 (1 HSPs)
chr4 (222-262)||(51066071-51066111)
[»] chr3 (1 HSPs)
chr3 (222-262)||(48626789-48626829)
[»] chr1 (1 HSPs)
chr1 (302-354)||(42138109-42138161)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 44244183 - 44243814
Alignment:
Q  16 cataaaattgaccggtaatgcacaagccatagattagacgattatatgcttcacgaccacgcctgatctttttaacaagcatttcagaaaataattcaag 115  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44244183 cataaaattgaccggtaatgcaaaagccatagattagacgattatatgcttcacgaccacgcctgatctttttaacaagcatttcagaaaataattcaag 44244084  T
Q  116 ggctatctctgcagagcttagatatgactgtattatacaacaaactgacattaacattgtctatagttccaaaatcaccatgtggtgcatgtgtggacaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  44244083 ggctatctctgcagagcttagatatgactgtattatacaacaaactgacattaatattgtctatagttccaaaatcaccatgtggtgcctgtgtggacaa 44243984  T
Q  216 gtatatggcc-tattttaaatagagagctgagccttctatt-----------------tcataggatgggtgatatgacccgatcatcttgactaactga 297  Q
    |||||||||| ||||||||||||||||| || |||||||||                 ||| |||||||||||||||||| |||||||||||||||||||    
T  44243983 gtatatggccttattttaaatagagagccgaaccttctattttataggaaagccctcatcacaggatgggtgatatgacctgatcatcttgactaactga 44243884  T
Q  298 gttaagcaaacatctataaataatctatcatataatatatttatgactaatttgaatattttgaagtatt 367  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  44243883 gttgagcaaacatctataaataatctataatataatatatttatgattaatttgaatattttgaagtatt 44243814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 17117445 - 17117405
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcatagg 262  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  17117445 ggcctattttaaatagagagccgagcctcctatttcatagg 17117405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 15457768 - 15457806
Alignment:
Q  224 cctattttaaatagagagctgagccttctatttcatagg 262  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  15457768 cctattttaaatagagagccgagcctcctatttcatagg 15457806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 21747029 - 21746991
Alignment:
Q  224 cctattttaaatagagagctgagccttctatttcatagg 262  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  21747029 cctattttaaatagagagccgagcctcctatttcatagg 21746991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 38985508 - 38985469
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcatagg 262  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  38985508 ggcctattttaaatagagagccgagcc-tctatttcatagg 38985469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 1366276 - 1366313
Alignment:
Q  225 ctattttaaatagagagctgagccttctatttcatagg 262  Q
    |||||||||||||||||| |||||||||||||||||||    
T  1366276 ctattttaaatagagagccgagccttctatttcatagg 1366313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 26282332 - 26282292
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcatagg 262  Q
    |||||||||||||||| |||| |||||| ||||||||||||    
T  26282332 ggcctattttaaatagtgagccgagcctcctatttcatagg 26282292  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 34523754 - 34523714
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcatagg 262  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  34523754 ggcctattttaaatagagagccgagcctcctatttcatagg 34523714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 43511885 - 43511925
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcatagg 262  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  43511885 ggcctattttaaatagagagccgagcctcctatttcatagg 43511925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 3349527 - 3349489
Alignment:
Q  224 cctattttaaatagagagctgagccttctatttcatagg 262  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  3349527 cctattttaaatagagagccgagcctcctatttcatagg 3349489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 10591072 - 10591035
Alignment:
Q  225 ctattttaaatagagagctgagccttctatttcatagg 262  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  10591072 ctattttaaatagagagccgagcctcctatttcatagg 10591035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 20976245 - 20976282
Alignment:
Q  221 tggcctattttaaatagagagctgagccttctatttca 258  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  20976245 tggcctattttaaatagagagccgagcctcctatttca 20976282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 41612987 - 41613028
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcatagga 263  Q
    ||||||||||||| ||||||| |||||| |||||||||||||    
T  41612987 ggcctattttaaaaagagagcagagcctcctatttcatagga 41613028  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 1690517 - 1690478
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcatag 261  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  1690517 ggcctattttaaatagagagccgagcctcctatttcatag 1690478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 29308267 - 29308230
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcat 259  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  29308267 ggcctattttaaatagagagccgagcctcctatttcat 29308230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 1092841 - 1092801
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcatagg 262  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  1092841 ggcctattttaaatagagaaccgagcctcctatttcatagg 1092801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 7926409 - 7926445
Alignment:
Q  224 cctattttaaatagagagctgagccttctatttcata 260  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  7926409 cctattttaaataaagagttgagccttctatttcata 7926445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 31861251 - 31861291
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcatagg 262  Q
    ||||||||||||||||||||  |||||| ||||||||||||    
T  31861251 ggcctattttaaatagagagtcgagcctcctatttcatagg 31861291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 51066111 - 51066071
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcatagg 262  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  51066111 ggcctattttaaatagagaaccgagcctcctatttcatagg 51066071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 48626829 - 48626789
Alignment:
Q  222 ggcctattttaaatagagagctgagccttctatttcatagg 262  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  48626829 ggcctattttaaatagagaaccgagcctcctatttcatagg 48626789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 42138109 - 42138161
Alignment:
Q  302 agcaaacatctataaataatctatcatataatatatttatgactaatttgaat 354  Q
    ||||||||||||||| |||| |||||||| |||||||||  ||||| ||||||    
T  42138109 agcaaacatctataattaatatatcatatcatatatttacaactaaattgaat 42138161  T

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