View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_59 (Length: 370)
Name: NF6641_low_59
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 52383443 - 52383793
Alignment:
| Q |
17 |
tacccactatttccccatctataactggaacatgacgaattcgattctctgcaatacaagtatagggtcacactatgtttcttcaatatttggtcacata |
116 |
Q |
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| T |
52383443 |
taccaactatttccccatctataactggaacatgacggattcgattctctgcaatacaagtatagggtcacac-atgtttcttcaatatttggtcacata |
52383541 |
T |
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| Q |
117 |
aattctgtagcaaaatatttatgtggaacagacagttacccaacattagtctcattgctcttagaatgttcgtgtccgaggtcacagttaccagttcatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
52383542 |
aattctgtagcaaaatatttatgtggaacagacaattacctaacattagtctcattgctcttagaatattcgtgtccgaggtcacagttaccaggtcatt |
52383641 |
T |
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| Q |
217 |
ctgttataggtaatcatattagttaaaagttat-aaatgtaaatgctagattggattaaacagaatgaaaatgagagagcatataaaataacctcattag |
315 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52383642 |
ctgttataggtaatcatattagttaaaagtcataaaatgtaaatgctagattggattaaacagaatgaaaatgagagagcatataaaataacctcattag |
52383741 |
T |
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| Q |
316 |
tcattatttgaccaacttgtgtgtataaaggtgatcttccttgtgcaactat |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52383742 |
tcattatttgaccaacttgtgtgtataaaggtgatcttccttgtgcaactat |
52383793 |
T |
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