View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_6 (Length: 690)
Name: NF6641_low_6
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 8246290 - 8245726
Alignment:
| Q |
1 |
aagaaatgagaaaaggtttatttatcccttacaacggatatagtgtgtagtagttgtggacatcattagatttagtgaaataaatttctctttctagatt |
100 |
Q |
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| T |
8246290 |
aagaaatgagaaaaggtttatttatcccttacaacagatatagtgtgtagtagttgtggacatcattagatttagtgaaataaatttctctttctagatt |
8246191 |
T |
|
| Q |
101 |
taatggtcttcactattataattattgcattgtgcaaccactgtagagaatacaagtctnnnnnnnngataaacgaagttggcaaaagctaacagcgaag |
200 |
Q |
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| T |
8246190 |
taatggtcttcactattataattattgcattgtgcaac---tgtagagaatacaagtctaaaaaaaagataaacgaagctggcaaaagctaacaacgaag |
8246094 |
T |
|
| Q |
201 |
aaaaataacgcaatttgagcagggagaat----aagtatggacttatggtgaagtacatgcaaatgattccaaatttgataccatgtgagcgattaaaga |
296 |
Q |
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| T |
8246093 |
aaaaataacgcaatttgagcagggagaatcaataagtatggacttatggtgaagtacatgcaaatgattccaaatttgataccatgtgagcgattaaaga |
8245994 |
T |
|
| Q |
297 |
acactaaagaaatcttaacaacgatgatcaattttatagaactttactaagagaggttggtnnnnnnntggaagtatgctcgttattcactttgtacatt |
396 |
Q |
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| T |
8245993 |
acactaaagaaatcttaacaacgatgatcaacttcgtagaactttattaagagaggttggtgagaaaatggaagtatgctcgttattcactttgtacaat |
8245894 |
T |
|
| Q |
397 |
gcagcatgtcattcacttttcacgcgatttcactc--aataatccggggtgttgtgttattcttttctttgtgattagttaatgaacttcgtgacatann |
494 |
Q |
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| T |
8245893 |
gcagcatgtcattcacttttcgcacgatttcactctgaataattcagggtgttgtgttattcttttctttgttattaattaacgaacttcgtgacatatt |
8245794 |
T |
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| Q |
495 |
nnnnnatggatatgaataataataataaattttgtagagttgtgttagacctgattaactacaatggttag |
565 |
Q |
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| T |
8245793 |
attttatggatatg---aataataataaattttgtagagttgtgttaggcctgattaactacaatggttag |
8245726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 8447520 - 8447442
Alignment:
| Q |
277 |
accatgtgagcgattaaagaacactaaagaaatcttaacaacgatgatcaattttatagaactttactaagagaggttg |
355 |
Q |
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| T |
8447520 |
accatgtgagcaattaaataatcctgaagaaatcttaacaacaatgatcaatgttatagaactttattaagagaggttg |
8447442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 637 - 672
Target Start/End: Complemental strand, 8245653 - 8245618
Alignment:
| Q |
637 |
tctcaattacttttattcaatcaccatggctgtgct |
672 |
Q |
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| T |
8245653 |
tctcaattacttttattcaatcaccatggctgtgct |
8245618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 8234139 - 8234039
Alignment:
| Q |
241 |
tatggtgaagtacatgcaaatgattccaaatttgataccatgtgagcgattaaagaacactaaagaaatcttaacaacgatgatcaattttatagaactt |
340 |
Q |
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|||||||||| |||||||||||| ||||| ||||| ||||||||| | |||||||| | ||||||| ||| | |||||||| |||||||||||| |
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| T |
8234139 |
tatggtgaagcacatgcaaatgaatccaagtttgagaccatgtgaaaggttaaagaatatcaaagaaaactt-----caatgatcaactttatagaactt |
8234045 |
T |
|
| Q |
341 |
tactaa |
346 |
Q |
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|||||| |
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| T |
8234044 |
tactaa |
8234039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 332
Target Start/End: Complemental strand, 8237320 - 8237228
Alignment:
| Q |
240 |
ttatggtgaagtacatgcaaatgattccaaatttgataccatgtgagcgattaaagaacactaaagaaatcttaacaacgatgatcaatttta |
332 |
Q |
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||||||||||||||||||| |||| ||||| ||||| |||| ||||| | ||||| || ||| |||||||||| | | | | ||||||||||| |
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| T |
8237320 |
ttatggtgaagtacatgcatatgaatccaagtttgaaaccacgtgagtggttaaacaaaactgaagaaatctttaaaccaacgatcaatttta |
8237228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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