View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_61 (Length: 367)
Name: NF6641_low_61
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_61 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 140 - 367
Target Start/End: Original strand, 28725385 - 28725608
Alignment:
| Q |
140 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttctggtgaagatat |
239 |
Q |
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| T |
28725385 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttctggtgaagat-- |
28725482 |
T |
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| Q |
240 |
atggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaacttaaatgtaagca |
339 |
Q |
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| T |
28725483 |
--ggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaacttaaatgtaagca |
28725580 |
T |
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| Q |
340 |
ttgtctctatatttgtttagtttcttgt |
367 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
28725581 |
ttgtctctatatttgtttagtttcttgt |
28725608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 140 - 277
Target Start/End: Original strand, 28727873 - 28728005
Alignment:
| Q |
140 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagt-aatcttattttctggtgaagata |
238 |
Q |
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||||||| |||||| |||||||||||| |||||||| ||||||| |||||||||||||||| ||||| ||||| | |||||||||| ||| ||||||| |
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| T |
28727873 |
tcaggtgagtcaatcatcttcaactca--aactatctccaacatctttgaatggagacgatgattgtttaacaatttaatcttatttactgttgaagat- |
28727969 |
T |
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| Q |
239 |
tatggcttactttgtagaattaattgcttgcttctttta |
277 |
Q |
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| T |
28727970 |
---ggcttactttatagaattaattacttgcttctttta |
28728005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 28725234 - 28725292
Alignment:
| Q |
8 |
tgagatgaacaaggattaatcaaaaaacaaatgtaagtctttgtacaaagatctttgta |
66 |
Q |
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| T |
28725234 |
tgagaagaacaaggattaatcaaaaaacaaatgtaagtctttgtacaaagatctttgta |
28725292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 140 - 277
Target Start/End: Original strand, 28734087 - 28734221
Alignment:
| Q |
140 |
tcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaa-gtaatcttattttctggtgaagata |
238 |
Q |
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||||||| |||||| ||||||| |||| ||||||||||| ||| ||||||||||||||||| ||||| ||||| ||||||||||| ||| ||||| |
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| T |
28734087 |
tcaggtgagtcaatcatcttcagctca--aactatctacagcattattgaatggagacgatgattgtttaacaatttaatcttatttactgttgaag--- |
28734181 |
T |
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| Q |
239 |
tatggcttac--tttgtagaattaattgcttgcttctttta |
277 |
Q |
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| T |
28734182 |
-atggcttactttttatagaattaattacttgcttctttta |
28734221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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