View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_low_62 (Length: 361)

Name: NF6641_low_62
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_low_62
NF6641_low_62
[»] chr8 (2 HSPs)
chr8 (16-333)||(33498045-33498362)
chr8 (232-266)||(6387592-6387626)
[»] chr4 (1 HSPs)
chr4 (228-266)||(13070058-13070096)
[»] chr7 (5 HSPs)
chr7 (230-269)||(26190018-26190057)
chr7 (232-266)||(17749725-17749759)
chr7 (232-266)||(24539238-24539272)
chr7 (232-266)||(27320256-27320290)
chr7 (218-266)||(34235573-34235621)
[»] chr3 (2 HSPs)
chr3 (232-263)||(30624662-30624693)
chr3 (232-266)||(27243076-27243110)
[»] chr1 (4 HSPs)
chr1 (232-262)||(37915786-37915816)
chr1 (232-266)||(50424981-50425015)
chr1 (232-266)||(50773226-50773260)
chr1 (237-270)||(5291652-5291685)
[»] chr6 (1 HSPs)
chr6 (230-266)||(5106327-5106363)
[»] chr2 (1 HSPs)
chr2 (230-266)||(41805891-41805927)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 33498362 - 33498045
Alignment:
Q  16 ttttcgactattgaggtatgcttctctgtaatcgacattgcactatgtggtcacttctctcgttaatattgaaccgcgcaatccatggatgcatgaacat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33498362 ttttcgactattgaggtatgcttctctgtaatcgacattgcactatgtggtcacttctctcgttaatattgaaccgcgcaatccatggatacatgaacat 33498263  T
Q  116 attattgtcatcttaatatatgcaaatacacactaacatatcattgaaagagaaatgttaccgatattttctttttaacactttcttaaacatccactct 215  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  33498262 attattgtcatcttaatatatgcaaatacacaccaacatatcattgaaagagaaatgttaccgatactttcttttcaacactttctcaaacatccactct 33498163  T
Q  216 tctatttttaagattttctctaacactcactcttttattgaataaaatcaacgtgaatccctccacttatttaggattcaaagtatcatattcacattga 315  Q
    |||||||| ||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  33498162 tctattttcaagattttctctaacactcacttctttattgaataaaatcaatgtgaatccctccacttatttaggattcaaagtatgatattcatattga 33498063  T
Q  316 tttcatccaataaaataa 333  Q
    ||||||||||||||||||    
T  33498062 tttcatccaataaaataa 33498045  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 6387592 - 6387626
Alignment:
Q  232 tctctaacactcactcttttattgaataaaatcaa 266  Q
    |||||||||||||||||||||||| ||||||||||    
T  6387592 tctctaacactcactcttttattggataaaatcaa 6387626  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 13070096 - 13070058
Alignment:
Q  228 attttctctaacactcactcttttattgaataaaatcaa 266  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  13070096 attttctctaacactcactcttttattgagtaaaatcaa 13070058  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 26190057 - 26190018
Alignment:
Q  230 tttctctaacactcactcttttattgaataaaatcaacgt 269  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  26190057 tttctctaacactcactcttttattgggtaaaatcaacgt 26190018  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 17749725 - 17749759
Alignment:
Q  232 tctctaacactcactcttttattgaataaaatcaa 266  Q
    |||||||||||||||||||||||| ||||||||||    
T  17749725 tctctaacactcactcttttattggataaaatcaa 17749759  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 24539272 - 24539238
Alignment:
Q  232 tctctaacactcactcttttattgaataaaatcaa 266  Q
    |||||||||||||||||||||||| ||||||||||    
T  24539272 tctctaacactcactcttttattggataaaatcaa 24539238  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 27320256 - 27320290
Alignment:
Q  232 tctctaacactcactcttttattgaataaaatcaa 266  Q
    |||| ||||||||||||||||||||||||||||||    
T  27320256 tctccaacactcactcttttattgaataaaatcaa 27320290  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 34235573 - 34235621
Alignment:
Q  218 tatttttaagattttctctaacactcactcttttattgaataaaatcaa 266  Q
    ||||||||| ||||||||||||||||||| | |||||  ||||||||||    
T  34235573 tatttttaacattttctctaacactcactttcttattagataaaatcaa 34235621  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 263
Target Start/End: Original strand, 30624662 - 30624693
Alignment:
Q  232 tctctaacactcactcttttattgaataaaat 263  Q
    ||||||||||||||||||||||||||||||||    
T  30624662 tctctaacactcactcttttattgaataaaat 30624693  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 27243076 - 27243110
Alignment:
Q  232 tctctaacactcactcttttattgaataaaatcaa 266  Q
    |||||||||||||||||||||||| ||||||||||    
T  27243076 tctctaacactcactcttttattggataaaatcaa 27243110  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 262
Target Start/End: Complemental strand, 37915816 - 37915786
Alignment:
Q  232 tctctaacactcactcttttattgaataaaa 262  Q
    |||||||||||||||||||||||||||||||    
T  37915816 tctctaacactcactcttttattgaataaaa 37915786  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 50425015 - 50424981
Alignment:
Q  232 tctctaacactcactcttttattgaataaaatcaa 266  Q
    |||||||||||||||||||||||| ||||||||||    
T  50425015 tctctaacactcactcttttattggataaaatcaa 50424981  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 50773260 - 50773226
Alignment:
Q  232 tctctaacactcactcttttattgaataaaatcaa 266  Q
    |||||||||||||||||||||||| ||||||||||    
T  50773260 tctctaacactcactcttttattggataaaatcaa 50773226  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 5291652 - 5291685
Alignment:
Q  237 aacactcactcttttattgaataaaatcaacgtg 270  Q
    ||||||||||||||||||||||||||| ||||||    
T  5291652 aacactcactcttttattgaataaaattaacgtg 5291685  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 5106327 - 5106363
Alignment:
Q  230 tttctctaacactcactcttttattgaataaaatcaa 266  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  5106327 tttctctaacactcacttttttattggataaaatcaa 5106363  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 41805927 - 41805891
Alignment:
Q  230 tttctctaacactcactcttttattgaataaaatcaa 266  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  41805927 tttctttaacactcactcttttattggataaaatcaa 41805891  T

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