View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_65 (Length: 353)
Name: NF6641_low_65
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 4775265 - 4774940
Alignment:
| Q |
10 |
agtagcaaaggtgtttcagaactctactcctcatgttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcat |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
4775265 |
agtaacaaaggtgtttcagaactctactcctcatgttctttggcttaaagtagtacttctcaaagtctcaatttttgctttacgtttgagtttgaatcat |
4775166 |
T |
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| Q |
110 |
gttcctgctcgagacaatttatataaaaggagggtcttggtgctgtttgtttttctgtttttgtagtgaacttgaccagttgcatgtttctgtaatcttg |
209 |
Q |
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| T |
4775165 |
gttcctgctagagacaatttatttaaaaggagggtcttagtgctgtttgtttttctgtttttgtagtgaacttgaccagttgcatgtttctctaatcttg |
4775066 |
T |
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| Q |
210 |
atgggttggtttcgtacacctatgctgagacagttgatcctgatttgttaatatatcannnnnnnagccttttaagaaaatcagtcattgctaaattagt |
309 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
4775065 |
atgggttggtttcgtacacctatgctgaaacagttgatcctgatttgttaatataccatttttttagccttttaagaaaatcagtcattgctaaattagt |
4774966 |
T |
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| Q |
310 |
gtttatttaaggtattaaccccaaaa |
335 |
Q |
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| T |
4774965 |
gtttatttaagatattaaccccaaaa |
4774940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 29553092 - 29552984
Alignment:
| Q |
39 |
ctcatgttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaag |
138 |
Q |
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| T |
29553092 |
ctcaggttctttggcttaaaatggttcctctcaaagtctctatttttgcttggcgattgggtctgaatcgtattcctactaaaaacaatttatttaaaag |
29552993 |
T |
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| Q |
139 |
gagggtctt |
147 |
Q |
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||||||||| |
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| T |
29552992 |
gagggtctt |
29552984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 17173614 - 17173714
Alignment:
| Q |
44 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
143 |
Q |
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||||||||||||||||| || | ||||||||| ||||| |||||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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| T |
17173614 |
gttctttggcttaaagtggttcatctcaaagtatcaatatttgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
17173713 |
T |
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| Q |
144 |
t |
144 |
Q |
| |
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| T |
17173714 |
t |
17173714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 38397707 - 38397807
Alignment:
| Q |
44 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
143 |
Q |
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||||||||||||||||| || ||||||||| |||||||| ||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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| T |
38397707 |
gttctttggcttaaagtggtttctctcaaagtatcaattttcgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
38397806 |
T |
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| Q |
144 |
t |
144 |
Q |
| |
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| |
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| T |
38397807 |
t |
38397807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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