View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_69 (Length: 343)
Name: NF6641_low_69
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 16212188 - 16212511
Alignment:
| Q |
1 |
taaatatgtgcttgtagtccgacaaaggagcatatactttatgtaagaatttggatgttttcttgttaattaggttttgaatttagtctcattgttgtaa |
100 |
Q |
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| T |
16212188 |
taaatatgtgcttgtagtccgacaaaggagcttatacattatgtaagaatttggatgttttcttgttaattaggttttgaatttagtctcattgttgtaa |
16212287 |
T |
|
| Q |
101 |
aaccggcttcgtaggatcagatgagtaactatttataaatcgttttagatcttacctcttttcaatgtgagatttgagtttttcttaataatgtctaggt |
200 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16212288 |
aaccggcttcgtaggatgagatgcgtaactatttataaatcgttttagatcttacctcttttcaatgtgagatttgagtttttcttaataatgtctaggt |
16212387 |
T |
|
| Q |
201 |
tgatcatggcataagtcgtaaagaagattaataatcgttgttctcataaatgaagtatttgatcgatcattacaaatatgtctgcaaaaatcttatacaa |
300 |
Q |
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||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16212388 |
tgatcatggcataagtcctatagaagattaataattgttattctcataaatgaagtatttgatcgatcattacaaatatgtctgcaaaaatcttatacaa |
16212487 |
T |
|
| Q |
301 |
ccaaatatttgaaaaggtggggat |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
16212488 |
ccaaatatttgaaaaggtggggat |
16212511 |
T |
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