View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6641_low_71 (Length: 332)
Name: NF6641_low_71
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_71 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 4244215 - 4244519
Alignment:
| Q |
9 |
agcacagaccaaaagaataagaattgttacatccttaaaagcttcaacaacaaaatgaaagaaacttttagaaggtggttttttgtaagtgttggaacca |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4244215 |
agcacaaaccaaaagaataagaattgttacatccttaaaagcttcaacaacaaaatgaaagaaacttttagaaggtggttttttgtaagtgttggaacca |
4244314 |
T |
|
| Q |
109 |
aacacttgttgtctaattgaaatgtcatgaaaatcatcatcatgacttttgataccaaactcaacgttggttttaagtgatgaagcaacaccttcaactc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4244315 |
aacacttgttgtctaattgaaatgtcatgaaaatcatcatcatgacttctgataccaaactcaacgttggttttaagtgatgaagcaacaccttcaactc |
4244414 |
T |
|
| Q |
209 |
caccatgtttctgaagtgtatcaatgcttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgaggtgaacttaaatcaaccac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4244415 |
caccatgtttctgaagtgtatcaatgcttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgaggtgaacttaaatcaaccac |
4244514 |
T |
|
| Q |
309 |
ggtga |
313 |
Q |
| |
|
||||| |
|
|
| T |
4244515 |
ggtga |
4244519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 6187271 - 6187578
Alignment:
| Q |
9 |
agcacagaccaaaagaataagaattgttacatccttaaaagcttcaacaacaaaatgaaagaaacttttagaaggtggttttttgtaagtgttggaacca |
108 |
Q |
| |
|
|||||| |||||||| || |||||||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6187271 |
agcacaaaccaaaaggattagaattgtaacatccttaaaagcttcaataacaaaatgaatgaaactcttagaaggtggttttttgtaagtgttggaacca |
6187370 |
T |
|
| Q |
109 |
aacacttgttgtctaattgaaatgtcatgaaaatcatca---tcatgacttttgataccaaactcaacgttggttttaagtgatgaagcaacaccttcaa |
205 |
Q |
| |
|
|||||||||| ||||||| ||| || | |||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6187371 |
aacacttgtttcctaattgcaatatcttcaaaatcattagtatcatcacttttgataccaaactcaatgttggttttaagtgatgaagcaacaccttcaa |
6187470 |
T |
|
| Q |
206 |
ctccaccatgtttctgaagtgtatcaatgcttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgaggtgaacttaaatcaac |
305 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
6187471 |
ctccaccatgattttgaagtgtatcaatgtttttctctttgacaatatctatgagagtttcttgatcaatggtaaaagagtgtggtaaatttaaatcaac |
6187570 |
T |
|
| Q |
306 |
cacggtga |
313 |
Q |
| |
|
|||||||| |
|
|
| T |
6187571 |
cacggtga |
6187578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University