View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_77 (Length: 313)
Name: NF6641_low_77
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 52165598 - 52165882
Alignment:
| Q |
14 |
ctgtggtaatagtcataccggaagtttcaaagatcttggaatgactgtgcttgttagtcaggtcaatcgcctccggaaaatgaaccgtcctttggtcgga |
113 |
Q |
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| T |
52165598 |
ctgtggtaatagccataccggaagtttcaaagatcttggaatgactgtgcttgttagtcaggtcaatcgcctccggaaaatgaaccgtcctttggtcgga |
52165697 |
T |
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| Q |
114 |
gttggctgtgcttccaccggtgatacctcggctgcactgtctgcttattgtgcttcagccggaattccttcgattgttttcctaccagcgaataaaatct |
213 |
Q |
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| T |
52165698 |
gttggctgtgcttccaccggtgatacctcggctgcactgtctgcttattgtgcttcagccggaattccttcgattgttttcctaccagcgaataaaatct |
52165797 |
T |
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| Q |
214 |
caaccgcccagttgattcagcctgtttcaaatggtgcattggtgcttagtattgacactgatttcgatggttgcatgaagctgat |
298 |
Q |
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| T |
52165798 |
caaccgcccagttgattcagcctgtttcaaatggtgcattggtgcttagtattgacactgatttcgatggttgcatgaagctgat |
52165882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 42663507 - 42663775
Alignment:
| Q |
15 |
tgtggtaatagtcataccggaagtttcaaagatcttggaatgactgtgcttgttagtcaggtcaatcgcctccggaaaatgaaccgtcctttggtcggag |
114 |
Q |
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| T |
42663507 |
tgtggtattagtcatactggtagttttaaggatctgggtatgactgtgcttgttagtcaagttaaccgcttgcgaaaaatgaaccgtccagttgttggtg |
42663606 |
T |
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| Q |
115 |
ttggctgtgcttccaccggtgatacctcggctgcactgtctgcttattgtgcttcagccggaattccttcgattgttttcctaccagcgaataaaatctc |
214 |
Q |
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| T |
42663607 |
ttggttgtgcttcgactggggatacttcggctgctttgtcggcttattgtgcatcggcagggataccttcgattgttttcctgcctgctaataggatttc |
42663706 |
T |
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| Q |
215 |
aaccgcccagttgattcagcctgtttcaaatggtgcattggtgcttagtattgacactgatttcgatgg |
283 |
Q |
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| T |
42663707 |
aattgctcagttggttcaaccgattgcaaatggtgcttttgttcttagcattgatactgattttgatgg |
42663775 |
T |
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