View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_low_78 (Length: 311)
Name: NF6641_low_78
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_low_78 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 33176984 - 33177264
Alignment:
| Q |
19 |
attagagacttcgtctaataaaatctgctctatgcagaaatgttaattaaggattgaactctgagcttttttgctttaaggatcaacgttcacatcataa |
118 |
Q |
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| T |
33176984 |
attagagacttcgtctaataaaatctgctctatgcagaaatgttaattaaggattgaactctgagcttttttgctttaaggatcaacgttcacatcataa |
33177083 |
T |
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| Q |
119 |
atttcatgttgatgagggctagcaacatacccaatgtaataatttattttcaacatgtactctctaatttgatgaaatttacagggttagcatgaccctg |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33177084 |
atttcatgttgatgagggctagcaacatccccaatgtaataatttattttcaacatgtactctctaatttgatgaaatttacggggttagcatgaccctg |
33177183 |
T |
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| Q |
219 |
taaacatgtcccacataaagtgttgagacccgtatgattttcacttaacaataacttgtgtactaaaa-cgttaagagata |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33177184 |
taaacatgtcccacataaagtgttgagacccgtatgattttcacttaacaataacttgtgtactaaaagcgttaagagata |
33177264 |
T |
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